Pseudomonas species Chol1 |
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Putative Pseudomonas species Chol1 RM systems
Ref: Holert,J. et al. unpublished
REBASE ref # 15535
Contig set: 4,869,033 bp
GenBank #: AMSL00000000 (NZ_AMSL00000000)
REBASE acronym: PspChol1
Org_num: 10220
All begin C211_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21292 | R | Type I restriction-modification system, | PspChol1ORF21292P | |
| 23089 | R | type I restriction-modification system subunit | PspChol1ORF23089P | |
| 23104 | R | PspChol1ORF2486P (35% identity) | PspChol1ORF23104P | |
| 23109 | 73 aa hypothetical protein | |||
| 23220 | M | N-6 DNA methylase | M.PspChol1ORF23220P | |
| 23225 | M | N-6 DNA methylase | M.PspChol1ORF23225P | |
| 23230 | M | N-6 DNA methylase | M.PspChol1ORF23230P | |
| ??? | S | S.PspChol1ORF2486P (38% identity) | S.PspChol1ORF23230P | |
| 23280 | S | S.Pst876ORF17830P (42% identity) | S.PspChol1ORF23285P | |
| 23285 | M | N-6 DNA methylase | M.PspChol1ORF23285P | |
| 21282 | Mrr restriction system protein | |||
| 21287 | R | PspChol1ORF17190P (48% identity) | PspChol1ORF21287P | |
| 2471 | 73 aa hypothetical protein | |||
| 2476 | R | PstYH1ORF2850P (97% identity) | PspChol1ORF2486P | |
| 2481 | S | S.Pal10367ORF2816P (66% identity) | S.PspChol1ORF2486P | |
| 2486 | M | M.Pae80432ORFHP (93% identity) | M.PspChol1ORF2486P | |
| 17185 | maltose/maltodextrin transporter ATP-binding | |||
| 17190 | M | M.Pst876ORF17830P (98% identity) | M.PspChol1ORF17190P | |
| 17195 | S | S.Pst876ORF17830P (91% identity) | S.PspChol1ORF17190P | |
| 17200 | death-on-curing protein | |||
| 17205 | R | Pst876ORF17830P (99% identity) | PspChol1ORF17190P | |
| 17210 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | DNA-cytosine methyltransferase family protein | GATC | M.PspChol1ORFAP |
| 4165 | 238 aa hypothetical protein | |||
| 4170 | M | M.Pae52373ORFAP (69% identity) | M.PspChol1ORF4170P | |
| 4175 | C | C.Pae52373ORFAP (67% identity) | C.PspChol1ORF4170P | |
| 4180 | R | Pae52373ORFAP (59% identity) | PspChol1ORF4170P | |
| 4185 | 420 aa hypothetical protein | |||
| 8739 | 320 aa hypothetical protein | |||
| 8744 | V | V.Pch6L11ORF9295P (98% identity) | V.PspChol1ORF8749P | |
| 8749 | M | M.Pst19ORF9900P (98% identity) | M.PspChol1ORF8749P | |
| 8754 | 483 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1936 | 61 aa hypothetical protein | |||
| 1941 | M | M.PpeCLAP6ORFCP (17% identity) | M.PspChol1ORF447P | |
| 1946 | DNA-damage-inducible protein D | |||
| 1951 | R | PaePD6dORF21080P (96% identity) | PspChol1ORF447P | |
| 1956 | TnAtcArs resolvase | |||
| 442 | 61 aa hypothetical protein | |||
| 447 | M | M.PpeCLAP6ORFCP (17% identity) | M.PspChol1ORF447P | |
| 452 | DNA-damage-inducible protein D | |||
| 457 | R | PaePD6dORF21080P (96% identity) | PspChol1ORF447P | |
| 462 | TnAtcArs resolvase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21277 | 441 aa hypothetical protein | |||
| 21282 | R | Mrr restriction system protein | PspChol1Mrr2P | |
| 21287 | type I restriction-modification system | |||