Helicobacter pylori Aklavik86 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Aklavik86 RM systems
Ref: Bertoli,M.T. et al. unpublished
REBASE ref # 19600
Complete sequence: 1,494,183 bp
GenBank #: CP003476
REBASE acronym: Hpy86
Org_num: 9711
All begin HPAKL86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2790 | 222 aa hypothetical protein | |||
| ??? | M | M.HpyCA15ORF2855P (100% identity) | M.Hpy86ORFCP | |
| 2805 | S | S.HpyCA10ORF2865P (100% identity) | S.Hpy86ORFCP | |
| 2810 | R | HpyCA15ORF2855P (100% identity) | Hpy86ORFCP | |
| 2815 | N-acetylneuraminic acid synthetase | |||
| 3265 | 36 aa hypothetical protein | |||
| 3270 | S | S.HpyCA15ORF3340P (100% identity) | S.Hpy86ORF3275P | |
| 3275 | M | M.HpyCA15ORF3340P (100% identity) | M.Hpy86ORF3275P | |
| ??? | R | HpyCA15ORF3340P (100% identity) | Hpy86ORF3275P | |
| 3290 | 631 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 270 | type III restriction enzyme | |||
| ??? | RM | HpyCA15ORF315P (100% identity) | Hpy86ORFDP | |
| 285 | 172 aa hypothetical protein | |||
| 315 | anthranilate synthase component I | |||
| 320 | R | HpyCA15VP (57% identity) | TGCA | Hpy86ORF325P |
| 325 | M | M.HpyCA15V (100% identity) | TGCA | M.Hpy86ORF325P |
| 330 | 67 aa hypothetical protein | |||
| 575 | 191 aa hypothetical protein | |||
| ??? | RM | Hpy274ORF1659P (97% identity) | Hpy86ORF580P | |
| ??? | S | S2.HpyCA15ORF585P (100% identity) | S.Hpy86ORF580P | |
| 595 | biotin synthase | |||
| 1615 | malonyl CoA-acyl carrier protein transacylase | |||
| 1620 | R | HpyCA15VIIIP (100% identity) | GATC | Hpy86ORF1625P |
| 1625 | M | M.HpyCA15VIII (100% identity) | GATC | M.Hpy86ORF1625P |
| 1640 | heat shock protein 90 | |||
| 2430 | rep helicase, single-stranded DNA-dependent | |||
| 2435 | M | M.HpyCA15IV (100% identity) | GTNNAC | M.Hpy86ORF2435P |
| 2440 | R | HpyCA15IVP (100% identity) | GTNNAC | Hpy86ORF2435P |
| 2445 | flagellar hook protein FlgE | |||
| 2535 | spore coat polysaccharide biosynthesis protein | |||
| 2540 | R | HpyF015IIIP (83% identity) | CCGG | Hpy86ORF2545P |
| 2545 | M | M.HpyCA8IV (100% identity) | CCGG | M.Hpy86ORF2545P |
| 2550 | ATP-dependent protease binding subunit (clpB) | |||
| 3350 | GTP-binding protein TypA | |||
| 3355 | M | M.HpyCA15II (100% identity) | ACNGT | M.Hpy86ORF3355P |
| 3360 | R | HpyCA15IIP (100% identity) | ACNGT | Hpy86ORF3355P |
| 3365 | 93 aa hypothetical protein | |||
| 3595 | GTP-binding protein LepA | |||
| 3600 | M | M.HpyCA15ORF3665P (100% identity) | GCNGC | M.Hpy86ORF3600P |
| 3605 | 156 aa hypothetical protein | |||
| 3805 | cadmium, zinc and cobalt-transporting ATPase | |||
| 3810 | M | M.Hpyfe82ORF3255P (100% identity) | GCSGC | M.Hpy86ORF3810P |
| 3815 | R | HpyS64ORFAP (100% identity) | GCSGC | Hpy86ORF3810P |
| 3820 | hof family outer membrane protein | |||
| 4140 | DNA gyrase subunit B | |||
| 4145 | M | M.HpyCA15VI (100% identity) | GTAC | M.Hpy86ORF4145P |
| 4150 | R | HpyCA15VIP (100% identity) | GTAC | Hpy86ORF4145P |
| 4155 | outer membrane protein 8 | |||
| 4295 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyCA15ORF4350P (100% identity) | Hpy86ORFBP | |
| 4315 | outer membrane protein HorF | |||
| 5250 | 144 aa hypothetical protein | |||
| 5255 | M | M.HpyCA15X (98% identity) | GCGC | M.Hpy86ORF5255P |
| 5260 | 67 aa hypothetical protein | |||
| 6095 | sialic acid synthase | |||
| 6100 | R | R1.HpyCA15ORF6195P (100% identity) | R2.Hpy86ORF6115P | |
| 6105 | R | R2.HpyCA15ORF6195P (100% identity) | R1.Hpy86ORF6115P | |
| 6110 | 256 aa hypothetical protein | |||
| 6115 | M | M2.HpyCA15ORF6190P (100% identity) | M.Hpy86ORF6115P | |
| 6120 | elongation factor P | |||
| 6370 | 3-deoxy-manno-octulosonate cytidylyltransferase | |||
| 6375 | M | M.HpyCA15I (100% identity) | CATG | M.Hpy86ORF6375P |
| 6380 | 94 aa hypothetical protein | |||
| 6795 | 351 aa hypothetical protein | |||
| ??? | RM | HpyCA15ORF6860P (99% identity) | Hpy86ORFAP | |
| 6810 | nicotinate-nucleotide pyrophosphorylase | |||
| 6870 | outer membrane protein HopK | |||
| ??? | R | HpyCA15IIIP (97% identity) | CCTC | Hpy86ORF6885P |
| 6885 | M | M2.HpyCA15IIIP (100% identity) | CCTC | M2.Hpy86ORF6885P |
| 6890 | M | M1.HpyCA15III (100% identity) | CCTC | M1.Hpy86ORF6885P |
| 6895 | 330 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 260 | ATP-dependent DNA helicase RecG | |||
| 265 | M | M.HpyF015ORF305P (29% identity) | M.Hpy86ORF265P | |
| 270 | R | HpyCA15IXP (100% identity) | Hpy86ORF265P | |
| ??? | restriction endonuclease | |||
| 2020 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||
| 2025 | R | HpyCA15XIP (100% identity) | Hpy86ORF2030P | |
| 2030 | M | M.HpyCA15XI (100% identity) | M.Hpy86ORF2030P | |
| 2035 | 54 aa hypothetical protein | |||
| 4545 | osmoprotection protein ProWX | |||
| 4550 | M | M.HpyCA15ORF4595P (100% identity) | M.Hpy86ORF4550P | |
| 4555 | type III restriction enzyme R protein | |||
| 4550 | adenine-specific DNA methylase | |||
| 4555 | R | HpyCA15ORF4595P (100% identity) | Hpy86ORF4555P | |
| 4560 | 145 aa hypothetical protein | |||