Helicobacter pylori Aklavik117 |
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Putative Helicobacter pylori Aklavik117 RM systems
Ref: Bertoli,M.T. et al. unpublished
REBASE ref # 19600
Complete sequence: 1,614,447 bp
GenBank #: CP003483
REBASE acronym: Hpy117
Org_num: 9710
All begin HPAKL117_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2140 | 36 aa hypothetical protein | |||
| 2145 | S | S.HpyK016ORF2780P (93% identity) | S.Hpy117ORF2150P | |
| 2150 | M | M.Hpy1768ORFYP (96% identity) | M.Hpy117ORF2150P | |
| 2155 | R | HpyU205ORF4150P (42% identity) | Hpy117ORF2150P | |
| 2160 | 679 aa hypothetical protein | |||
| 2315 | 262 aa hypothetical protein | |||
| ??? | R | HpyLIM3ORF2160P (49% identity) | Hpy117ORF2320P | |
| 2330 | 631 aa hypothetical protein | |||
| 3760 | 65 aa hypothetical protein | |||
| 3765 | S | S.HpyK112ORF3930P (98% identity) | S.Hpy117ORF3765P | |
| 3770 | cadmium-transporting ATPase | |||
| 4055 | hydroxyethylthiazole kinase | |||
| 4060 | R | HpyCA19ORF5370P (97% identity) | Hpy117ORF4070P | |
| 4065 | S | S.HpyHK840ORFLP (96% identity) | S.Hpy117ORF4070P | |
| 4070 | M | M.HpyCA6ORF2835P (98% identity) | M.Hpy117ORF4070P | |
| 4075 | 228 aa hypothetical protein | |||
| 6845 | 82 aa hypothetical protein | |||
| 6850 | S | S.HpyPU007XVIII (71% identity) | S.Hpy117ORF6850P | |
| 6855 | formyltetrahydrofolate deformylase | |||
| 7365 | 30 aa hypothetical protein | |||
| 7370 | S | S.Hpyfe115ORF7810P (97% identity) | S.Hpy117ORF7375P | |
| 7375 | M | M.HpyAs009ORF7400P (98% identity) | M.Hpy117ORF7375P | |
| 7380 | type I restriction-modification enzyme subunit | |||
| 7385 | R | HpyME28IVP (89% identity) | Hpy117ORF7375P | |
| 7390 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 215 | 330 aa hypothetical protein | |||
| 220 | M | M1.HpyU205V (98% identity) | CCTC | M1.Hpy117ORF220P |
| 225 | M | M2.HpyU003VP (99% identity) | CCTC | M2.Hpy117ORF220P |
| 230 | R | Hpy464ORF245P (94% identity) | CCTC | Hpy117ORF220P |
| 235 | type II DNA modification enzyme | |||
| 230 | 408 aa hypothetical protein | |||
| 235 | M | M.HpyKH39ORFPP (98% identity) | GTSAC | M.Hpy117ORF235P |
| 240 | R | Hpyfe32ORF6935P (99% identity) | GTSAC | Hpy117ORF235P |
| 245 | adenine/cytosine DNA methyltransferase | |||
| 440 | HrgA protein | |||
| 445 | M | M.HpyP82ORFKP (98% identity) | GATC | M.Hpy117ORF445P |
| 460 | 176 aa hypothetical protein | |||
| 1300 | exodeoxyribonuclease VII large subunit | |||
| 1305 | R | Hpy4ORF1335P (88% identity) | CCGG | Hpy117ORF1310P |
| 1310 | M | M.HpyCA8IV (100% identity) | CCGG | M.Hpy117ORF1310P |
| 1315 | ATP-dependent protease binding subunit (clpB) | |||
| 1720 | GTP-binding protein LepA | |||
| 1725 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.Hpy117ORF1725P |
| 1730 | 99 aa hypothetical protein | |||
| 2390 | outer membrane protein (omp22) | |||
| 2395 | M | M.Hpyfe39ORF4900P (97% identity) | ATTAAT | M.Hpy117ORF2395P |
| 2400 | type II adenine specific methyltransferase | |||
| 2405 | GTP-binding protein TypA | |||
| 2410 | M | M.HpySP207II (99% identity) | ACNGT | M.Hpy117ORF2410P |
| ??? | R | HpyK51ORF455P (99% identity) | ACNGT | Hpy117ORF2410P |
| 2425 | catalase-like protein | |||
| 2510 | DNA gyrase subunit B | |||
| 2515 | M | M.HpyME28II (99% identity) | GTAC | M.Hpy117ORF2515P |
| 2520 | R | HpyCA16VIIP (98% identity) | GTAC | Hpy117ORF2515P |
| 2525 | outer membrane protein | |||
| 4345 | flagellar hook protein FlgE | |||
| 4350 | M | M.HpyCOL305VII (99% identity) | GTNNAC | M.Hpy117ORF4350P |
| 4355 | rep helicase, single-stranded DNA-dependent | |||
| 5070 | biotin carboxylase | |||
| 5075 | M | M.HpySG13XIII (99% identity) | TCNNGA | M.Hpy117ORF5075P |
| 5080 | R | HpyTW16XIIP (99% identity) | TCNNGA | Hpy117ORF5075P |
| 5085 | 197 aa hypothetical protein | |||
| 5255 | 144 aa hypothetical protein | |||
| ??? | R | HpyCA1IXP (98% identity) | GCGC | Hpy117ORF5270P |
| 5270 | M | M.HpyAL02ORFQP (98% identity) | GCGC | M.Hpy117ORF5270P |
| 5275 | flgM protein | |||
| 5715 | 222 aa hypothetical protein | |||
| 5720 | M | M.HpySG33I (98% identity) | CATG | M.Hpy117ORF5720P |
| ??? | R | HpySP405IP (80% identity) | CATG | Hpy117ORF5720P |
| 5735 | serine acetyltransferase | |||
| 6430 | 67 aa hypothetical protein | |||
| 6435 | R | HpyK050VIP (87% identity) | GANTC | Hpy117ORF6440P |
| 6440 | M | M.Hpyfe89ORF7150P (99% identity) | GANTC | M.Hpy117ORF6440P |
| ??? | 1135 aa hypothetical protein | |||
| 6440 | adenine specific DNA methyltransferase | |||
| ??? | RM | Hpy271ORFUP (62% identity) | Hpy117ORF6445P | |
| 6455 | nicotinate-nucleotide pyrophosphorylase | |||
| 6505 | transcriptional regulator | |||
| 6510 | R | HpyK027VP (99% identity) | GAAGA | Hpy117ORF6515P |
| 6515 | M | M2.HpyOK316ORFPP (99% identity) | GAAGA | M1.Hpy117ORF6515P |
| 6520 | M | M2.Hpyfe23ORF7115P (99% identity) | GAAGA | M2.Hpy117ORF6515P |
| 6535 | 55 aa hypothetical protein | |||
| 6770 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 6775 | M | M.HpyKG4IX (97% identity) | GAATTC | M.Hpy117ORF6775P |
| 6780 | R | HpySG17VIP (98% identity) | GAATTC | Hpy117ORF6775P |
| 6785 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7055 | DNA polymerase I | |||
| 7060 | S | S.HpyPU007XIX (69% identity) | S.Hpy117ORF7065P | |
| 7065 | RM | HpyCA19ORF560P (98% identity) | Hpy117ORF7065P | |
| 7070 | 191 aa hypothetical protein | |||
| 7200 | 355 aa hypothetical protein | |||
| 7205 | M | M1.HpyU123V (99% identity) | CCATC | M1.Hpy117ORF7205P |
| 7210 | M | M2.Hpy17ORF1399P (97% identity) | GATGG | M2.Hpy117ORF7205P |
| ??? | R | HpyPU007IVP (98% identity) | CCATC | Hpy117ORF7205P |
| 7225 | 388 aa hypothetical protein | |||
| 7290 | transcription elongation factor NusA | |||
| ??? | RM | HpyPU002ORF7065P (54% identity) | Hpy117ORF7295P | |
| 7310 | type III R-M system restriction enzyme | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3895 | 145 aa hypothetical protein | |||
| 3900 | R | HpyTW23ORF205P (90% identity) | Hpy117ORF3905P | |
| ??? | M | M.HpyCA6ORF4595P (98% identity) | M.Hpy117ORF3905P | |
| 3915 | osmoprotection protein ProWX | |||
| ??? | type II restriction endonuclease | |||
| 7310 | R | type III R-M system restriction enzyme | Hpy117ORF7310P | |
| 7315 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2555 | glutamine synthetase | |||
| 2560 | R | HpyK014GmrSDP (87% identity) | Hpy117GmrSDP | |
| 2565 | 50S ribosomal protein L9 | |||