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Putative Helicobacter pylori 26695 RM systems
Ref: Manolov,A. et al. unpublished
REBASE ref # 15228
Complete sequence: 1,667,892 bp
GenBank #: CP003904
REBASE acronym: Hpy26695
Org_num: 9694
All begin C694_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2360 | 31 aa hypothetical protein | |||
2365 | S | S.HpyS299ORF3810P (100% identity) | S.Hpy26695ORF2375P | |
2370 | type I restriction enzyme M protein | |||
2375 | M | M.HpyS299ORF3810P (100% identity) | M.Hpy26695ORF2375P | |
2380 | R | HpyS299ORF3810P (100% identity) | Hpy26695ORF2375P | |
2385 | 631 aa hypothetical protein | |||
4045 | 48 aa hypothetical protein | |||
4050 | S | S.HpyS299IV (100% identity) | CTANNNNNNNNTGT | S.Hpy26695IV |
4055 | cadmium-transporting ATPase, P-type (cadA) | |||
4330 | hydroxyethylthiazole kinase | |||
4335 | R | HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | Hpy26695IIIP |
4340 | 33 aa hypothetical protein | |||
??? | S | S.HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | S.Hpy26695III |
4355 | M | M.HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | M.Hpy26695III |
4360 | 227 aa hypothetical protein | |||
7240 | 235 aa hypothetical protein | |||
7245 | R | HpyS299ORF7180P (99% identity) | Hpy26695ORF7250P | |
7250 | M | M.HpyS299ORF7180P (100% identity) | M.Hpy26695ORF7250P | |
7255 | S | S.HpyRif2ORF7260P (100% identity) | S.Hpy26695ORF7250P | |
7270 | biotin synthase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
225 | 330 aa hypothetical protein | |||
230 | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.Hpy26695VI |
235 | M | M1.HpyS299III (100% identity) | CCTC | M2.Hpy26695VIP |
??? | R | HpyRif1ORF230P (100% identity) | CCTC | Hpy26695VIP |
250 | 419 aa hypothetical protein | |||
??? | HNH endonuclease family protein | |||
250 | R | HpyS299VIIIP (100% identity) | CCTTC | Hpy26695ORF255P |
255 | M | M.HpyS299VIII (100% identity) | CCTTC | M.Hpy26695ORF255P |
260 | sodium/proline symporter | |||
440 | malonyl CoA-acyl carrier protein transacylase | |||
445 | R | HpyS299VP (100% identity) | GATC | Hpy26695VIIIP |
450 | M | M.HpyS299V (100% identity) | GATC | M.Hpy26695VIII |
455 | alpha-1,2-fucosyltransferase | |||
1310 | exodeoxyribonuclease VII large subunit | |||
1315 | M | M.HpyS299VII (100% identity) | TCGA | M.Hpy26695X |
1320 | 132 aa hypothetical protein | |||
1320 | 132 aa hypothetical protein | |||
??? | R | HpyS299ORF4845P (100% identity) | CCGG | Hpy26695ORF1330P |
1330 | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.Hpy26695ORF1330P |
1335 | ATP-dependent protease binding subunit (clpB) | |||
1860 | 202 aa hypothetical protein | |||
1865 | R | HpyRif2ORF1870P (100% identity) | TCNNGA | Hpy26695ORF1870P |
??? | M | M.HpyS299ORF4305P (100% identity) | TCNNGA | M.Hpy26695ORF1870P |
1880 | biotin carboxylase | |||
2445 | 367 aa hypothetical protein | |||
2450 | M | M.HpyS299II (100% identity) | ATTAAT | M.Hpy26695II |
2455 | 282 aa hypothetical protein | |||
2460 | GTP-binding protein TypA | |||
??? | M | M.HpyRif2ORFEP (100% identity) | ACNGT | M.Hpy26695ORFFP |
2475 | R | HpyRif2ORFEP (100% identity) | ACNGT | Hpy26695ORFFP |
??? | DNA methyltransferase | |||
2475 | 170 aa hypothetical protein | |||
??? | M | M.HpyS299ORF3700P (94% identity) | ACGT | M.Hpy26695ORFGP |
2490 | R | HpyS299ORF3700P (100% identity) | ACGT | Hpy26695ORFGP |
2495 | catalase-like protein | |||
2575 | DNA gyrase subunit B | |||
??? | M | M.HpyRif2ORFDP (100% identity) | GTAC | M.Hpy26695ORFEP |
??? | R | HpyRif2ORFDP (100% identity) | GTAC | Hpy26695ORFEP |
2600 | 403 aa hypothetical protein | |||
3445 | glycerol-3-phosphate dehydrogenase | |||
??? | RM | HpyRif2ORFGP (100% identity) | Hpy26695ORFDP | |
3465 | 449 aa hypothetical protein | |||
4675 | flagellar hook protein FlgE | |||
4680 | R | HpyS299ORF1570P (100% identity) | GTNNAC | Hpy26695ORF4685P |
4685 | M | M.HpyRif2ORF4690P (100% identity) | GTNNAC | M.Hpy26695ORF4685P |
4690 | rep helicase, single-stranded DNA-dependent | |||
5780 | 144 aa hypothetical protein | |||
5785 | M | M.HpyS299ORF435P (100% identity) | GCGC | M.Hpy26695ORF5785P |
5790 | 67 aa hypothetical protein | |||
6250 | 222 aa hypothetical protein | |||
6255 | M | M.HpyS299I (100% identity) | CATG | M.Hpy26695I |
6260 | R | HpyRif2ORF6260P (100% identity) | CATG | Hpy26695IP |
6265 | serine acetyltransferase | |||
6965 | protease | |||
6970 | R | HpyS299ORF8615P (100% identity) | GANTC | Hpy26695VIIP |
6975 | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.Hpy26695VII |
??? | Type IIG R-M system | |||
6975 | adenine-specific DNA methyltransferase | |||
??? | RM | HpyRif2ORF6990P (100% identity) | Hpy26695ORF6980P | |
6995 | nicotinate-nucleotide pyrophosphorylase | |||
7045 | response regulator | |||
7050 | R | HpyS299ORF7360P (100% identity) | GAAGA | Hpy26695VP |
7055 | M | M2.HpyS299ORF7360P (100% identity) | GAAGA | M1.Hpy26695V |
7060 | M | M2.HpySWT04XIII (100% identity) | GAAGA | M2.Hpy26695V |
7065 | adenine-specific DNA methylase | |||
7610 | DNA polymerase I | |||
7615 | S | S.HpyCGRORF1496P (100% identity) | S.Hpy26695ORF7620P | |
7620 | RM | HpyS299ORF6805P (100% identity) | Hpy26695ORF7620P | |
7625 | 191 aa hypothetical protein | |||
7850 | 179 aa hypothetical protein | |||
??? | RM | HpyRif2ORFAP (100% identity) | GCGTA | Hpy26695ORFAP |
7875 | type III restriction enzyme R protein (res) | |||
7955 | IS605 transposase (tnpA) | |||
7960 | M | M.HpyRif2ORF7965P (100% identity) | TGCA | M.Hpy26695ORF7960P |
??? | R | HpyCGRORF1559P (100% identity) | TGCA | Hpy26695ORF7960P |
7970 | ubiquinol cytochrome c oxidoreductase, | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
3050 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||
3055 | R | HpyS299VIP (97% identity) | GCAG | Hpy26695IXP |
3060 | M | M.HpyS299VI (100% identity) | GCAG | M.Hpy26695IX |
3065 | 54 aa hypothetical protein | |||
7060 | type IIS restriction enzyme M2 protein (mod) | |||
??? | M | M.HpyRif2ORF7075P (100% identity) | TCAG | M.Hpy26695ORF7065P |
7075 | R | HpyS299ORF7350P (100% identity) | TCAG | Hpy26695ORF7065P |
7080 | rod shape-determining protein MreC | |||
??? | type IIS restriction enzyme R and M protein | |||
7875 | R | HpyS299ORF6570P (100% identity) | Hpy26695ORFBP | |
??? | M | M.HpyRif2ORFBP (100% identity) | M.Hpy26695ORFBP | |
7890 | ATP-dependent DNA helicase RecG | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2635 | 34 aa hypothetical protein | |||
2640 | R | HpyS299GmrSD2P (100% identity) | Hpy26695GmrSDP | |
2645 | 50S ribosomal protein L9 |