Helicobacter heilmannii ASB1.4 |
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Putative Helicobacter heilmannii ASB1.4 RM systems
Ref: Smet,A.S. et al. unpublished
REBASE ref # 16293
Complete sequence: 1,804,601 bp
GenBank #: HE984298
REBASE acronym: Hhe1
Org_num: 9691
All begin BN341_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2450 | 40 aa hypothetical protein | |||
| 2460 | S | S.HheASB1ORF10810P (97% identity) | S.Hhe1ORF2460P | |
| 2470 | 62 aa hypothetical protein | |||
| 9010 | 132 aa hypothetical protein | |||
| ??? | R | HheASB1ORF5050P (58% identity) | Hhe1ORF9020P | |
| 9050 | 111 aa hypothetical protein | |||
| 9010 | 132 aa hypothetical protein | |||
| ??? | R | HheASB1ORF5050P (100% identity) | R1.Hhe1ORF9040P | |
| 9040 | R | Hhe1ORF9020P (41% identity) | R2.Hhe1ORF9040P | |
| 9050 | 111 aa hypothetical protein | |||
| 17150 | TYPE II DNA MODIFICATION ENZYME | |||
| 17160 | M | M.HheASB1ORF15560P (99% identity) | M.Hhe1ORF17160P | |
| 17170 | S | S.Hhe1ORF2460P (49% identity) | S.Hhe1ORF17160P | |
| 17180 | C4-dicarboxylate anaerobic carrier, putative | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1170 | 43 aa hypothetical protein | |||
| 1180 | M | M.HheASB1ORF11910P (100% identity) | M.Hhe1ORF1180P | |
| 1190 | 62 aa hypothetical protein | |||
| 2170 | M | M.HheASB1ORF11070P (100% identity) | M.Hhe1ORF2170P | |
| 2180 | R | HheASB1ORF11070P (100% identity) | GGNCC | Hhe1ORF2170P |
| 2190 | 59 aa hypothetical protein | |||
| 2470 | 62 aa hypothetical protein | |||
| 2480 | M | M1.HheASB1ORF10790P (100% identity) | GCATC | M1.Hhe1ORF2480P |
| ??? | M | M2.HheASB1ORF10790P (92% identity) | GCATC | M2.Hhe1ORF2480P |
| 2490 | R | HheASB1ORF10790P (100% identity) | GCATC | Hhe1ORF2480P |
| 2500 | 67 aa hypothetical protein | |||
| 3210 | Formamidase amiF | |||
| 3220 | M | M.HheASB1ORF10150P (100% identity) | ACGT | M.Hhe1ORF3220P |
| 3230 | R | HheASB1ORF10150P (97% identity) | ACGT | Hhe1ORF3220P |
| 3240 | Mobile element protein | |||
| 4270 | HNH endonuclease domain protein | |||
| 4280 | M | M.HheASB1ORF9440P (100% identity) | CCGG | M.Hhe1ORF4280P |
| 4290 | Dephospho-CoA kinase | |||
| 4620 | Molybdenum cofactor biosynthesis protein MoaA | |||
| 4630 | R | HheASB1ORF9020P (100% identity) | GATC | Hhe1ORF4640P |
| 4640 | M | M.HheASB1ORF9020P (100% identity) | GATC | M.Hhe1ORF4640P |
| 4650 | Molybdopterin-guanine dinucleotide biosynthesis | |||
| 4680 | Menaquinone via futalosine step 4 | |||
| ??? | R | HheASB1ORF8950P (51% identity) | CATG | Hhe1ORF4700P |
| ??? | M | M.HheASB1ORF8950P (87% identity) | CATG | M1.Hhe1ORF4700P |
| 4700 | M | M.HheASB1ORF8950P (46% identity) | CATG | M2.Hhe1ORF4700P |
| 4710 | 77 aa hypothetical protein | |||
| 5260 | 123 aa hypothetical protein | |||
| 5270 | R | HheASB1ORF8390P (100% identity) | ACNGT | Hhe1ORF5280P |
| 5280 | M | M.HheASB1ORF8390P (100% identity) | ACNGT | M1.Hhe1ORF5280P |
| 5290 | M | Heat shock protein 60 family chaperone GroEL | ACNGT | M2.Hhe1ORF5280P |
| 5300 | Heat shock protein 60 family chaperone GroEL | |||
| 5280 | pseudogene | |||
| 5290 | M | Heat shock protein 60 family chaperone GroEL | M.Hhe1ORF5290P | |
| 5300 | Heat shock protein 60 family chaperone GroEL | |||
| 5980 | Chitinase | |||
| 5990 | M | M.HheASB1ORF7820P (100% identity) | CCNNGG | M.Hhe1ORF5990P |
| 6000 | 53 aa hypothetical protein | |||
| 6240 | FIG00469472: hypothetical protein | |||
| ??? | R | Hhe1ORF6270P (100% identity) | GTSAC | Hhe1ORFYP |
| ??? | M | M.HheASB1ORF7600P (89% identity) | GTSAC | M.Hhe1ORFYP |
| 6280 | Isoleucyl-tRNA synthetase | |||
| 6240 | FIG00469472: hypothetical protein | |||
| ??? | R | Hhe1ORFYP (100% identity) | GTSAC | Hhe1ORF6270P |
| 6270 | M | M.Hhe1ORFYP (87% identity) | GTSAC | M.Hhe1ORF6270P |
| 6280 | Isoleucyl-tRNA synthetase | |||
| 6890 | 52 aa hypothetical protein | |||
| 6900 | R | HheASB1ORF6960P (100% identity) | Hhe1ORF6910P | |
| 6910 | M | M.Csp835ORF1635P (79% identity) | M.Hhe1ORF6910P | |
| 6920 | Carbamoyl-phosphate synthase large chain | |||
| 8220 | 141 aa hypothetical protein | |||
| 8230 | M | M.HheASB1ORF5720P (100% identity) | M.Hhe1ORF8230P | |
| 8240 | 134 aa hypothetical protein | |||
| 9230 | 58 aa hypothetical protein | |||
| ??? | M | M.HheASB1ORF4890P (53% identity) | M.Hhe1ORF9250P | |
| 9260 | 263 aa hypothetical protein | |||
| 11170 | 51 aa hypothetical protein | |||
| 11180 | RM | HheASB1ORF3140P (15% identity) | Hhe1ORF11180BP | |
| 11190 | RM | HheASB1ORF3140P (93% identity) | Hhe1ORF11180AP | |
| 11200 | 39 aa hypothetical protein | |||
| 12140 | 4-carboxymuconolactone decarboxylase | |||
| 12150 | M | M.HheASB1ORF2280P (100% identity) | RGATCY | M.Hhe1ORF12150P |
| 12160 | R | HheASB1ORF2280P (100% identity) | RGATCY | Hhe1ORF12150P |
| 12170 | DNA-cytosine methyltransferase | |||
| 12160 | 203 aa hypothetical protein | |||
| 12170 | M | M.HheASB1ORF2260P (100% identity) | GCNGC | M.Hhe1ORF12170P |
| 12180 | R | HheASB1ORF2260P (100% identity) | GCNGC | Hhe1ORF12170P |
| 12190 | 65 aa hypothetical protein | |||
| 14000 | Shikimate 5-dehydrogenase I alpha | |||
| 14010 | M | M.Hsp0003ORF470P (84% identity) | GTAC | M.Hhe1ORF14010P |
| 14020 | R | HheASB1ORF510P (100% identity) | GTAC | Hhe1ORF14010P |
| 14030 | 314 aa hypothetical protein | |||
| 14920 | 37 aa hypothetical protein | |||
| 14940 | R | HheASB1ORF17540P (94% identity) | GAATTC | R1.Hhe1ORF15000P |
| 14950 | pseudogene | |||
| 14960 | pseudogene | |||
| 14970 | 37 aa hypothetical protein | |||
| 14980 | pseudogene | |||
| 14990 | R | HheASB1ORF17540P (84% identity) | GAATTC | R2.Hhe1ORF15000P |
| 15000 | M | M.PmeBin212ORFAP (64% identity) | GAATTC | M.Hhe1ORF15000P |
| 15010 | Oligopeptide transport ATP-binding protein OppD | |||
| 15020 | Oligopeptide transport system permease protein | |||
| ??? | M | M.HheASB1ORF17470P (55% identity) | CCTNAGG | M.Hhe1ORF15030P |
| 15040 | 49 aa hypothetical protein | |||
| 16670 | 236 aa hypothetical protein | |||
| 16680 | R | HheASB1ORF15940P (100% identity) | RGCGCY | Hhe1ORF16680P |
| 16690 | 51 aa hypothetical protein | |||
| 16710 | 289 aa hypothetical protein | |||
| 16720 | M | DNA-cytosine methyltransferase | CCGG | M.Hhe1ORF16720P |
| 16730 | 51 aa hypothetical protein | |||
| 17140 | 490 aa hypothetical protein | |||
| 17150 | M | M.HheASB1ORF15570P (92% identity) | CGWCG | M.Hhe1ORF17150P |
| 17160 | Type I restriction-modification | |||
| 18450 | 45 aa hypothetical protein | |||
| 18460 | RM | HfeORF12690P (76% identity) | Hhe1ORF18460P | |
| ??? | S | S1.HfeORF12690AP (70% identity) | S.Hhe1ORF18460P | |
| 18470 | type IIS restriction enzyme | |||
| ??? | 210 aa hypothetical protein, partial | |||
| 18470 | RM | Hwi2049ORF8570P (6% identity) | Hhe1ORF18470P | |
| ??? | S | Hci12219ORF257P (9% identity) | S1.Hhe1ORF18470P | |
| 18480 | S | S2.HfeORF12690BP (67% identity) | S2.Hhe1ORF18470P | |
| 18490 | 568 aa hypothetical protein | |||
| 18670 | 49 aa hypothetical protein | |||
| 18680 | M | M.HheASB1ORF14150P (92% identity) | TCNNGA | M.Hhe1ORF18680P |
| 18690 | R | HheASB1ORF14150P (74% identity) | TCNNGA | Hhe1ORF18680P |
| 18700 | 342 aa hypothetical protein | |||
| 19480 | 248 aa hypothetical protein | |||
| 19490 | M | M2.Hhe1ORF19490P (84% identity) | CCWGG | M1.Hhe1ORF19490P |
| 19500 | M | M1.Hhe1ORF19490P (84% identity) | CCWGG | M2.Hhe1ORF19490P |
| 19510 | 43 aa hypothetical protein | |||