Herpetosiphon aurantiacus DSM 785 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Herpetosiphon aurantiacus DSM 785 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 10364
| Sequence length: | GenBank #: | |
| Chromosome: | 6,346,587 bp | CP000875 (NC_009972) |
| plasmid pHAU02: | 99,204 bp | CP000877 (NC_009974) |
REBASE acronym: Hau
Org_num: 4925
All begin Haur_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1279 | alpha amylase catalytic region | |||
| ??? | S | S.CwaWHORF5967P (39% identity) | S.HauORF1282P | |
| 1282 | M | M1.LboCZ1ORF6690P (65% identity) | M.HauORF1282P | |
| 1283 | R | EcoEI R domain protein | HauORF1282P | |
| 1284 | transcriptional regulator, AraC family | |||
| plasmid pHAU02 | ||||
| 5275 | N-6 DNA methylase | |||
| 5276 | S | S.MtaRPORF12540P (20% identity) | S.HauORF5277P | |
| 5277 | M | M.Bca13669ORFHP (58% identity) | M.HauORF5277P | |
| 5278 | R | RspRSORF734P (59% identity) | HauORF5277P | |
| 5279 | 419 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 113 | transcriptional regulator, ArsR family | |||
| 114 | M | M.HgeGC42ORF22550P (94% identity) | CATG | M.HauIII |
| 115 | Carboxypeptidase Taq | |||
| 317 | 254 aa hypothetical protein | |||
| 318 | M | M.HgeGC42ORF14215P (86% identity) | TTAA | M.HauORF318P |
| 319 | metal dependent phosphohydrolase | |||
| 527 | transcriptional regulator, XRE family | |||
| 528 | M | M.HgiDII (97% identity) | GTCGAC | M.HauORF528P |
| 529 | R | HgiDII (92% identity) | GTCGAC | HauORF528P |
| 530 | 360 aa hypothetical protein | |||
| 543 | 312 aa hypothetical protein | |||
| 544 | RM | HauORF544P (100% identity) | TGGCCA | HauII |
| 545 | protein of unknown function DUF262 | |||
| 543 | 312 aa hypothetical protein | |||
| 544 | RM | HauII (100% identity) | TGGCCA | HauORF544P |
| 545 | protein of unknown function DUF262 | |||
| 1125 | 160 aa hypothetical protein | |||
| 1126 | R | NspC057ORF27625P (26% identity) | GACNNNGTC | HauORF1126P |
| 1127 | transposase IS4 family protein | |||
| 1128 | M | M.NspN6ORF275P (40% identity) | GACNNNGTC | M.HauORF1126P |
| 1129 | 225 aa conserved hypothetical protein | |||
| 1332 | 80 aa hypothetical protein | |||
| 1333 | M | M.AfaJ481ORF1240P (18% identity) | GCWGC | M.HauORF1333P |
| 1334 | R | Pca1083ORF3022P (23% identity) | GCWGC | HauORF1333P |
| 1335 | HNH endonuclease | |||
| 1359 | 146 aa hypothetical protein | |||
| 1360 | M | M.HgeGC42ORF24610P (13% identity) | M.HauORF1360P | |
| 1361 | 259 aa hypothetical protein | |||
| 1364 | 172 aa hypothetical protein | |||
| 1365 | RM | CasB79ORF22475P (56% identity) | HauORF1365P | |
| 1366 | 316 aa hypothetical protein | |||
| 1936 | RNA methylase, NOL1/NOP2/sun family | |||
| 1937 | RM | HauI (100% identity) | GGCCAAG | HauORF1937P |
| 1938 | transposase IS4 family protein | |||
| 1957 | helicase domain protein | |||
| 1958 | RM | Cba17ORF4788P (52% identity) | HauORF1958P | |
| 1959 | protein of unknown function DUF559 | |||
| 2193 | Carbohydrate-binding family V/XII | |||
| 2194 | RM | HgeGC42ORF910P (80% identity) | HauORF2194P | |
| 2195 | Integrin alpha beta-propellor repeat protein | |||
| 2539 | helicase domain protein | |||
| 2540 | RM | Pte9214ORF4969P (14% identity) | HauORF2540P | |
| 2541 | 338 aa hypothetical protein | |||
| 2643 | 224 aa hypothetical protein | |||
| 2644 | M | M.Bbr544ORF20545P (50% identity) | GCGCGC | M.HauORF2644P |
| 2645 | 442 aa hypothetical protein | |||
| 2752 | 168 aa hypothetical protein | |||
| 2753 | C | C.DolHORF939P (39% identity) | C.HauORF2756P | |
| ??? | R | Mko49807ORF8665P (54% identity) | GGATCC | HauORF2756P |
| 2756 | M | M.Tbo1301ORF243860P (60% identity) | GGATCC | M.HauORF2756P |
| 2757 | 101 aa conserved hypothetical protein | |||
| 2919 | short-chain dehydrogenase/reductase SDR | |||
| 2920 | M | M.HgeGC42ORF6945P (93% identity) | GGATG | M.HauORF2920P |
| 2921 | 100 aa hypothetical protein | |||
| 3042 | domain of unknown function DUF1730 | |||
| 3043 | M | M.HgeGC42ORF5660P (92% identity) | GANTC | M.HauORF3043P |
| 3044 | ABC-3 protein | |||
| 4063 | 68 aa hypothetical protein | |||
| 4064 | M | M.HgeGC42ORF11560P (96% identity) | TTAA | M.HauORF4064P |
| 4065 | Alpha-amylase | |||
| 4780 | Methyltransferase type 11 | |||
| 4781 | R | HgeGC42ORF17920P (82% identity) | HauORF4781P | |
| 4782 | 190 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4538 | 153 aa conserved hypothetical protein | |||
| 4539 | M | M.HgeGC42ORF12125P (82% identity) | GATC | M.HauORF4539P |
| 4540 | protein of unknown function DUF1349 | |||