Helicobacter pylori FD719 |
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Putative Helicobacter pylori FD719 RM systems
Ref: Gunaletchumy,S.P. et al. J. Bacteriol. 194 (20), 5695-5696 (2012)
REBASE ref # 15007
Contig set: 1,642,171 bp
GenBank #: AKHU00000000
REBASE acronym: HpyFD719
Org_num: 9425
All begin N409_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6605 | S | S.HpyKH7ORFRP (88% identity) | S.HpyFD719ORF6605P | |
| 6610 | cadmium transporter | |||
| 8250 | S | S.HpySW28ORF6945P (56% identity) | S.HpyFD719ORF8250P | |
| 8255 | DNA polymerase I | |||
| ??? | S | S.HpyLI06XV (47% identity) | S.HpyFD719ORFBP | |
| 3300 | metal-dependent hydrolase | |||
| ??? | M | M.HpyKH37ORFMP (47% identity) | M.HpyFD719ORF3315P | |
| 3530 | pseudogene | |||
| 3315 | S | S.HpyT016ORF7480P (95% identity) | S.HpyFD719ORF3315P | |
| 3320 | 33 aa hypothetical protein | |||
| 6900 | hydroxyethylthiazole kinase | |||
| 6910 | R | HpyKH11ORFRP (95% identity) | HpyFD719ORF6915P | |
| 6915 | S | S.HpyMA04XIII (44% identity) | S.HpyFD719ORF6915P | |
| ??? | hypothetical protein | |||
| 7160 | M | M.HpyKH45ORFYP (89% identity) | M.HpyFD719ORF7160P | |
| 7165 | S | S.HpyFD719ORF6605P (94% identity) | S.HpyFD719ORF7160P | |
| 2635 | polyphosphate kinase | |||
| ??? | S | S.HpyFD535ORFL1P (49% identity) | S.HpyFD719ORF2650P | |
| 2650 | M | M.HpyFD662ORF3220P (94% identity) | M.HpyFD719ORF2650P | |
| 2655 | R | HpyUM067ORF2930P (97% identity) | HpyFD719ORF2650P | |
| 2660 | 631 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1745 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.Hpy5004ORF6605P (95% identity) | TCGA | M.HpyFD719ORF1750P |
| 1760 | 231 aa hypothetical protein | |||
| 6920 | membrane protein | |||
| 6925 | M | M.HpyMA19IV (98% identity) | ATTAAT | M.HpyFD719ORF6925P |
| 6930 | glycosyltransferase 9 family protein | |||
| 7360 | DNA methyltransferase | |||
| 7365 | M | M.HpyFD703ORF8125P (98% identity) | GANTC | M.HpyFD719ORF7365P |
| 7370 | hypothetical protein | |||
| 1755 | 152 aa hypothetical protein | |||
| ??? | R | HpyKH11ORFIP (98% identity) | CCGG | HpyFD719ORF1765P |
| 1765 | M | M.HpyMA25III (100% identity) | CCGG | M.HpyFD719ORF1765P |
| 1770 | molecular chaperone ClpB | |||
| 7805 | 52 aa hypothetical protein | |||
| ??? | M | M.HpyUM084ORF6720P (98% identity) | TCNGA | M.HpyFD719ORF7810P |
| ??? | R | HpyKH4ORFEP (97% identity) | TCNGA | HpyFD719ORF7810P |
| 7820 | purine nucleoside phosphorylase | |||
| 6975 | pseudogene | |||
| 6935 | M | M.HpyKH7ORFA1P (99% identity) | ACNGT | M.HpyFD719ORF6935P |
| 6940 | R | type II restriction endonuclease | ACNGT | HpyFD719ORF6935P |
| 6945 | DNA methyltransferase | |||
| 7275 | type III restriction endonuclease subunit M | |||
| 7280 | M | M2.Hpyfe78ORF7125P (98% identity) | GAAGA | M1.HpyFD719ORF7280P |
| 7285 | M | M2.HpyKH37ORFXP (97% identity) | GAAGA | M2.HpyFD719ORF7280P |
| 7355 | R | HpyMA04IVP (97% identity) | GAAGA | HpyFD719ORF7280P |
| 7290 | chemotaxis protein CheY | |||
| 4225 | 59 aa hypothetical protein | |||
| ??? | M | M.HpyFD430ORFF1P (97% identity) | CATG | M.HpyFD719ORF4230P |
| 4235 | hydrolase | |||
| 760 | alpha-1,2-fucosyltransferase | |||
| 765 | M | M.HpyMA17II (97% identity) | GATC | M.HpyFD719ORF765P |
| 770 | R | HpyFD430ORFA1P (97% identity) | GATC | HpyFD719ORF765P |
| 780 | malonyl CoA-ACP transacylase | |||
| 8550 | flgM protein | |||
| ??? | M | M.HpyKH45ORFAP (96% identity) | GCGC | M.HpyFD719ORF8555P |
| 8560 | 144 aa hypothetical protein | |||
| 6940 | type II restriction endonuclease | |||
| ??? | M | M.HpyUM114ORF8590P (92% identity) | ACGT | M.HpyFD719ORF6945P |
| ??? | R | HpyBGR10ORF2230P (98% identity) | ACGT | HpyFD719ORF6945P |
| 6955 | catalase | |||
| 975 | sodium:proline symporter | |||
| 980 | M | M2.HpyUM084ORF2915P (99% identity) | CCTC | M2.HpyFD719ORF980P |
| 985 | M | M1.HpyMA17III (97% identity) | CCTC | M1.HpyFD719ORF980P |
| 990 | agmatine deiminase | |||
| ??? | R | HpyKH15ORFB1P (97% identity) | GANTC | HpyFD719ORFKP |
| ??? | 159 aa hypothetical protein HPCPY6261_0295 | |||
| 5620 | glycerol-3-phosphate dehydrogenase subunit C | |||
| ??? | RM | HpyKH15ORFOAP (88% identity) | HpyFD719ORF5625P | |
| ??? | 602 aa hypothetical protein | |||
| ??? | R | HpyFD430ORFA1P (97% identity) | GATC | HpyFD719ORF765P |
| ??? | M | M.HpyMA17II (97% identity) | GATC | M.HpyFD719ORF765P |
| 1650 | 32 aa hypothetical protein | |||
| ??? | M | M.HpyNAB47ORFE1P (54% identity) | M.HpyFD719ORF1660P | |
| 1665 | 67 aa hypothetical protein | |||
| ??? | type II restriction endonuclease | |||
| ??? | RM | 602 aa hypothetical protein | HpyFD719ORF5630P | |
| 5635 | membrane protein | |||
| 7500 | flagellar hook protein FlgE | |||
| 7505 | R | Hpyfe115ORF2725P (95% identity) | GTNNAC | HpyFD719ORF7505P |
| ??? | M | M.HpyKH32ORFGP (98% identity) | GTNNAC | M.HpyFD719ORF7505P |
| 7515 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyKH39ORFHP (98% identity) | GTAC | M.HpyFD719ORF4735P |
| ??? | R | HpyNAB47ORFC1P (97% identity) | GTAC | HpyFD719ORF4735P |
| 4730 | DNA gyrase subunit B | |||
| ??? | M | M.HpyKH39ORFHP (98% identity) | GTAC | M.HpyFD719ORF4735P |
| ??? | R | HpyNAB47ORFC1P (97% identity) | GTAC | HpyFD719ORF4735P |
| 4745 | membrane protein | |||
| 3625 | amidophosphoribosyltransferase | |||
| 3630 | RM | HpyKH17ORFC1P (98% identity) | HpyFD719ORF3630P | |
| 3635 | S | S.HpyKH34ORFWP (86% identity) | S.HpyFD719ORF3630P | |
| 7340 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyK116ORF265P (89% identity) | HpyFD719ORF7345P | |
| 2195 | elongation factor 4 | |||
| 2200 | M | M.HpyMM09ORF1685P (99% identity) | GCNGC | M.HpyFD719ORF2200P |
| 2205 | 156 aa hypothetical protein | |||
| 3400 | DEAD/DEAH box helicase | |||
| 3405 | RM | Hpybs3ORFE1P (88% identity) | HpyFD719ORF3405P | |
| 3410 | 30 aa hypothetical protein | |||
| 7140 | membrane protein | |||
| 7145 | R | HpyT014ORF4195P (98% identity) | GGCC | HpyFD719ORF7150P |
| ??? | M | M.HpyKH23ORFJP (99% identity) | GGCC | M.HpyFD719ORF7150P |
| 7160 | type I restriction endonuclease | |||
| 3085 | methyltransferase | |||
| 3090 | M | M.HpyMA25VIII (100% identity) | TCNNGA | M.HpyFD719ORF3090P |
| 3095 | R | HpyMM04XIIP (99% identity) | TCNNGA | HpyFD719ORF3090P |
| 3100 | Laminin subunit alpha-2 precursor | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7260 | rod shape-determining protein MreC | |||
| 7265 | R | HpyNAB47ORFVP (92% identity) | TCAG | HpyFD719ORF7265P |
| ??? | M | M.HpyFD423ORFLP (96% identity) | TCAG | M.HpyFD719ORF7265P |
| 7280 | 287 aa hypothetical protein | |||
| ??? | R | HpyNAB47ORFVP (92% identity) | TCAG | HpyFD719ORF7265P |
| ??? | M | M.HpyFD423ORFLP (96% identity) | TCAG | M.HpyFD719ORF7265P |
| 7190 | biotin synthase | |||
| ??? | R | Hpy228ORF6315P (92% identity) | HpyFD719ORF7200P | |
| ??? | M | M.HpyC124ORF6820P (96% identity) | M.HpyFD719ORF7200P | |
| 7205 | 47 aa hypothetical protein | |||
| 3390 | ATP-dependent DNA helicase RecG | |||
| 3395 | M | M.HpyMA25ORF7305P (95% identity) | M.HpyFD719ORF3395P | |
| 3400 | R | HpyKH10ORFWP (97% identity) | HpyFD719ORF3395P | |
| 3405 | type II restriction endonuclease | |||