Helicobacter pylori FD703 |
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Putative Helicobacter pylori FD703 RM systems
Ref: Gunaletchumy,S.P. et al. J. Bacteriol. 194 (20), 5695-5696 (2012)
REBASE ref # 15007
Contig set: 1,676,483 bp
GenBank #: AKHS00000000
REBASE acronym: HpyFD703
Org_num: 9423
All begin N408_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7545 | CAAX protease | |||
| ??? | M | M.HpyFD719ORF3315P (95% identity) | M.HpyFD703ORF7550P | |
| 7560 | metal-dependent hydrolase | |||
| 5065 | membrane protein | |||
| 5070 | M | M.HpyKH36ORFQP (96% identity) | M.HpyFD703ORF5075P | |
| 5075 | S | S.HpyIS7ORF3180P (69% identity) | S.HpyFD703ORF5075P | |
| 5080 | R | HpyKH39ORFVP (97% identity) | HpyFD703ORF5075P | |
| 5090 | hydroxyethylthiazole kinase | |||
| 5385 | cadmium transporter | |||
| 5390 | S | S.HpyJ029XV (92% identity) | S.HpyFD703ORF5390P | |
| 5395 | 35 aa hypothetical protein | |||
| 2290 | polyphosphate kinase | |||
| 2300 | S | S.Hpyfe124ORF4770P (98% identity) | S.HpyFD703ORF2305P | |
| 2305 | M | M.HpyUM084ORF1645P (96% identity) | M.HpyFD703ORF2305P | |
| 2310 | R | HpyKH14ORFHP (75% identity) | HpyFD703ORF2305P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4850 | membrane protein | |||
| 4855 | M | M.HpyMA25IV (98% identity) | ATTAAT | M.HpyFD703ORF4855P |
| 4860 | glycosyltransferase 9 family protein | |||
| 8060 | DNA methyltransferase | |||
| 8125 | M | M.Hpy70ORF49P (99% identity) | GANTC | M.HpyFD703ORF8125P |
| 8065 | 56 aa hypothetical protein | |||
| ??? | R | HpyMA25ORF6550P (100% identity) | GANTC | HpyFD703ORF8125P |
| 8080 | peptidase S41 | |||
| 8060 | RM | DNA methyltransferase | HpyFD703ORF8060P | |
| 8125 | 159 aa hypothetical protein | |||
| ??? | M | M.HpyMM04ORF2090P (98% identity) | ACNGT | M.HpyFD703ORF4880P |
| 4890 | R | HpyPE116ORF2225P (79% identity) | ACNGT | HpyFD703ORF4880P |
| 4895 | DNA methyltransferase | |||
| 4890 | type II restriction endonuclease | |||
| ??? | M | hypothetical protein | ACGT | M.HpyFD703ORF4895P |
| ??? | R | HpyFD430ORFAP (88% identity) | ACGT | HpyFD703ORF4895P |
| 4905 | catalase | |||
| 7200 | DNA polymerase I | |||
| 7205 | S | S2.HpySP10ORF7235P (94% identity) | S1.HpyFD703ORF7205P | |
| 7210 | S | S.HpyUM084ORF1905P (51% identity) | S2.HpyFD703ORF7205P | |
| ??? | RM | hypothetical protein | HpyFD703ORF7205P | |
| 7220 | amidophosphoribosyltransferase | |||
| ??? | hypothetical protein | |||
| ??? | M | M2.HpyBR14IV (94% identity) | GAAGA | M1.HpyFD703ORF7970P |
| ??? | M | M2.HpyUM084ORF8285P (97% identity) | GAAGA | M2.HpyFD703ORF7970P |
| ??? | R | HpyF221ORFEP (91% identity) | GAAGA | HpyFD703ORF7970P |
| 7985 | chemotaxis protein CheY | |||
| 125 | flgM protein | |||
| ??? | M | M.HpyIS5XI (95% identity) | GCGC | M.HpyFD703ORF130P |
| 135 | hypothetical protein | |||
| 3765 | flagellar hook protein FlgE | |||
| 3770 | R | HpyKG6XIP (99% identity) | GTNNAC | HpyFD703ORF3775P |
| ??? | M | M.HpyFD430ORFB1P (98% identity) | GTNNAC | M.HpyFD703ORF3775P |
| 3780 | ATP-dependent DNA helicase | |||
| 1400 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyFD719ORF1750P (91% identity) | TCGA | M.HpyFD703ORF1405P |
| 1410 | hypothetical protein | |||
| 7655 | hypothetical protein | |||
| ??? | M | M.HpyFD535ORFK1P (38% identity) | M.HpyFD703ORF7660P | |
| 7670 | CAAX protease | |||
| 1410 | hypothetical protein | |||
| ??? | R | HpyG004IIP (92% identity) | CCGG | HpyFD703ORF1420P |
| 1420 | M | M.HpyKH14ORFJP (97% identity) | CCGG | M.HpyFD703ORF1420P |
| 1425 | molecular chaperone ClpB | |||
| 2665 | membrane protein | |||
| 2670 | RM | HpyMM02ORF4095P (90% identity) | HpyFD703ORF2670P | |
| 2675 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 8035 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyNP02ORF6430P (90% identity) | HpyFD703ORF8040P | |
| 3525 | membrane protein | |||
| ??? | R | HpyKH41ORFGP (97% identity) | GTAC | HpyFD703ORF3535P |
| 3535 | M | M.HpyKH17ORFFP (96% identity) | GTAC | M.HpyFD703ORF3535P |
| 3540 | DNA gyrase subunit B | |||
| 325 | Laminin subunit alpha-2 precursor | |||
| 330 | R | HpyKH25ORFCP (98% identity) | TCNNGA | HpyFD703ORF335P |
| 335 | M | M.HpyMA25VIII (100% identity) | TCNNGA | M.HpyFD703ORF335P |
| 340 | 127 aa hypothetical protein | |||
| 7460 | pseudogene | |||
| ??? | RM | HpyBG1XVII (79% identity) | HpyFD703ORF7440P | |
| 7450 | DEAD/DEAH box helicase | |||
| 6455 | serine acetyltransferase | |||
| 6460 | R | HpyUM084ORF7015P (96% identity) | CATG | HpyFD703ORF6460P |
| 6465 | M | M.HpyMM08I (97% identity) | CATG | M.HpyFD703ORF6460P |
| 6470 | hydrolase | |||
| 4460 | agmatine deiminase | |||
| 4465 | M | M1.HpyNP01III (97% identity) | CCTC | M1.HpyFD703ORF4465P |
| 4470 | M | M2.HpyUM084ORF2915P (97% identity) | CCTC | M2.HpyFD703ORF4465P |
| 4475 | sodium:proline symporter | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7465 | M | M.HpyFD719ORF3395P (28% identity) | M.HpyFD703ORF7455P | |
| 7470 | ATP-dependent DNA helicase RecG | |||
| ??? | R | HpyMA17ORF6515P (91% identity) | HpyFD703ORF7885P | |
| 7885 | M | M.HpyMM09ORF6615P (95% identity) | M.HpyFD703ORF7885P | |
| 7890 | endonuclease | |||
| 7945 | rod shape-determining protein MreC | |||
| 7950 | R | HpyKH14ORFSP (95% identity) | HpyFD703ORF7960P | |
| ??? | M | M.HpyS299ORF7350P (90% identity) | M.HpyFD703ORF7960P | |
| 7970 | hypothetical protein | |||
| ??? | R | HpyKH14ORFSP (95% identity) | HpyFD703ORF7960P | |
| ??? | M | M.HpyS299ORF7350P (90% identity) | M.HpyFD703ORF7960P | |
| ??? | 1275 aa hypothetical protein | |||
| 7450 | R | HpyKH40ORFPP (96% identity) | HpyFD703ORF7455P | |
| 7455 | M | M.HpyFD719ORF3395P (28% identity) | M.HpyFD703ORF7455P | |