Desulfococcus oleovorans Hxd3 |
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Putative Desulfococcus oleovorans Hxd3 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 10338
Complete sequence: 3,944,167 bp
GenBank #: CP000859 (NC_009943)
REBASE acronym: DolH
Org_num: 4920
All begin Dole_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 244 | protein of unknown function DUF45 | |||
| 245 | R | Hal12sORF15130P (75% identity) | DolHORF251P | |
| 246 | protein of unknown function DUF262 | |||
| 247 | protein of unknown function DUF262 | |||
| 248 | protein of unknown function DUF262 | |||
| 249 | S | S.MtuSV96ORFAP (64% identity) | S.DolHORF251P | |
| 250 | transcriptional regulator | |||
| 251 | M | M.Msp202ORF15735P (76% identity) | M.DolHORF251P | |
| 252 | 333 aa conserved hypothetical protein | |||
| 275 | Tetratricopeptide TPR_2 repeat protein | |||
| 276 | M | M.UarANMEORFHP (75% identity) | M.DolHORF276P | |
| 277 | S | S.Nsp0038ORF2979P (42% identity) | S.DolHORF276P | |
| 278 | R | Mri707ORFAP (51% identity) | DolHORF276P | |
| 279 | 373 aa hypothetical protein | |||
| 821 | DNA adenine methylase | |||
| 822 | S | S.Ecl15842ORFRP (50% identity) | S.DolHORF823P | |
| 823 | M | M.TthFOKN1ORF2235P (82% identity) | M.DolHORF823P | |
| 824 | R | Dspc12ORF21905P (80% identity) | DolHORF823P | |
| 825 | 301 aa conserved hypothetical protein | |||
| 1257 | sigma54 specific transcriptional | |||
| 1258 | R | Rpi602ORF17170P (73% identity) | DolHORF1259P | |
| 1259 | M | M.Rsp5965ORF19910P (82% identity) | M.DolHORF1259P | |
| 1260 | S | S.UbaQ1ORF2520P (22% identity) | S.DolHORF1259P | |
| 1261 | N-6 DNA methylase | |||
| 2092 | DNA repair protein RadC | |||
| 2093 | S | S.Cap1201ORF3045P (43% identity) | S.DolHORF2095P | |
| 2094 | protein of unknown function DUF1016 | |||
| 2095 | M | M.Dba7044VI (82% identity) | M.DolHORF2095P | |
| 2096 | R | Dba7044VIP (78% identity) | DolHORF2095P | |
| 2097 | UbiA prenyltransferase | |||
| 2235 | response regulator receiver protein | |||
| 2236 | M | M.DthMLF1ORF6300P (81% identity) | M.DolHORF2236P | |
| 2237 | S | S.Gsp1H9ORFDP (41% identity) | S.DolHORF2236P | |
| 2238 | protein of unknown function DUF262 | |||
| 2239 | R | MspNP4ORF16855P (58% identity) | DolHORF2236P | |
| 2240 | 174 aa conserved hypothetical protein | |||
| 2723 | 93 aa hypothetical protein | |||
| 2724 | R | Din5ORF1707P (87% identity) | DolHORF2725P | |
| 2725 | M | M.GhaSAP1ORF8915P (81% identity) | M.DolHORF2725P | |
| 2726 | S | S.Dde132ORFDP (38% identity) | S.DolHORF2725P | |
| 2727 | ABC transporter | |||
| 2924 | 86 aa hypothetical protein | |||
| 2925 | M | M.Nsp26ORF8355P (74% identity) | M.DolHORF2925P | |
| 2926 | S | S.TsyCad16ORFYP (22% identity) | S.DolHORF2925P | |
| 2927 | R | Nsp26ORF8355P (74% identity) | DolHORF2925P | |
| 2928 | protein of unknown function DUF45 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 820 | 348 aa conserved hypothetical protein | |||
| 821 | M | M.Mhy49840ORF2922P (49% identity) | GATC | M.DolHORF821P |
| 822 | restriction modification system DNA specificity | |||
| 902 | 376 aa hypothetical protein | |||
| ??? | RM | DolHORF903P (45% identity) | DolHORF905P | |
| 906 | Formate C-acetyltransferase | |||
| 902 | 376 aa hypothetical protein | |||
| ??? | RM | DolHORF905P (45% identity) | DolHORF903P | |
| 905 | restriction enzyme | |||
| 935 | lipoprotein, putative | |||
| 936 | C | C.Mtr4126ORF1948P (41% identity) | C.DolHORF939P | |
| 937 | R | OkrAI (40% identity) | GGATCC | DolHORF939P |
| 938 | RNA methylase | |||
| 939 | M | M1.Lro951ORF14250P (56% identity) | GGATCC | M.DolHORF939P |
| 940 | oligopeptide/dipeptide ABC transporter, ATPase | |||
| 937 | restriction endonuclease BamHI | |||
| 938 | M | M.KstCSTR1ORF28030P (33% identity) | M.DolHORF938P | |
| 939 | DNA methylase N-4/N-6 domain protein | |||
| 3088 | 355 aa hypothetical protein | |||
| 3089 | R | Mmo48659ORF380P (81% identity) | CTGCAG | DolHORF3090P |
| 3090 | M | M.Dba7044I (57% identity) | CTGCAG | M.DolHORF3090P |
| 3091 | transposase IS4 family protein | |||
| 3095 | multiple antibiotic resistance (MarC)-related | |||
| 3096 | R | Dph13687ORF620P (69% identity) | DolHORF3097P | |
| 3097 | M | M.Dba7044ORFKP (68% identity) | AGGCCT | M.DolHORF3097P |
| 3098 | 95 aa hypothetical protein | |||
| 3140 | 237 aa conserved hypothetical protein | |||
| 3141 | RM | DmcATV1ORF214P (47% identity) | DolHORF3141P | |
| 3142 | 79 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 824 | EcoEI R domain protein | |||
| 825 | R | 301 aa conserved hypothetical protein | DolHMrrP | |
| 826 | 194 aa hypothetical protein | |||
| 918 | 96 aa hypothetical protein | |||
| 919 | R | HNH endonuclease | DolHMcrAP | |
| 920 | 287 aa conserved hypothetical protein | |||
| 2237 | restriction modification system DNA specificity | |||
| 2238 | R | Mma9314GmrSDP (76% identity) | DolHGmrSDP | |
| 2239 | type I site-specific deoxyribonuclease, HsdR | |||