Rhodanobacter denitrificans 2APBS1 |
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Putative Rhodanobacter denitrificans 2APBS1 RM systems
Ref: Kostka,J.E. et al. J. Bacteriol. 194 (16), 4461-4462 (2012)
REBASE ref # 14775
Contig set: 4,167,392 bp
GenBank #: AGIL00000000 (NZ_AGIL00000000)
REBASE acronym: RdeR2
Org_num: 9229
All begin R2APBS1DRAFT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3361 | cysteine dioxygenase type I | |||
| 3362 | R | RdePBS1ORF8875P (100% identity) | RdeR2ORF3363P | |
| 3363 | M | M.RdePBS1ORF8875P (100% identity) | M.RdeR2ORF3363P | |
| 3364 | S | S.RdePBS1ORF8875P (100% identity) | S.RdeR2ORF3363P | |
| 3365 | SMC domain protein | |||
| 3538 | peptidase M61 domain protein | |||
| 3539 | M | M.Rsp24678ORF13313P (100% identity) | M.RdeR2ORF3539P | |
| 3540 | restriction modification system DNA specificity | |||
| 3541 | plasmid maintenance system killer | |||
| 3542 | plasmid maintenance system antidote protein, XRE | |||
| 3543 | R | RdeR2ORF3623P (100% identity) | RdeR2ORF3539P | |
| 3544 | glycerophosphoryl diester phosphodiesterase | |||
| 3539 | N-6 DNA methylase | |||
| 3540 | S | S.RdePBS1ORF14930P (100% identity) | S.RdeR2ORF3623P | |
| 3541 | plasmid maintenance system killer | |||
| 845 | 165 aa hypothetical protein | |||
| 846 | R | Rsp24678ORF17055P (100% identity) | RdeR2ORF846P | |
| 847 | helix-turn-helix domain protein | |||
| 854 | 393 aa hypothetical protein | |||
| 855 | S | S.RdeR3ORF17580P (100% identity) | S.RdeR2ORF856P | |
| 856 | M | M.Rsp24678ORF17005P (100% identity) | M.RdeR2ORF856P | |
| 857 | helix-turn-helix domain protein | |||
| 1481 | restriction endonuclease | |||
| 1482 | M | M.RdePBS1ORF5950P (100% identity) | M.RdeR2ORF1482P | |
| 1483 | S | S.RdePBS1ORF5950P (100% identity) | S.RdeR2ORF1482P | |
| 1484 | 203 aa hypothetical protein | |||
| 1485 | R | RdePBS1ORF5950P (87% identity) | RdeR2ORF1482P | |
| 1486 | 164 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2348 | AAA ATPase | |||
| 2349 | M | M.RdeR5ORF10390P (92% identity) | M.RdeR2ORF2349P | |
| 2350 | 170 aa hypothetical protein | |||
| 26 | Appr-1-p processing domain protein | |||
| ??? | R | RdePBS1ORF160P (100% identity) | GCNGC | RdeR2I |
| 27 | 282 aa hypothetical protein | |||
| 29 | histidine kinase | |||
| 30 | M | M.RdePBS1ORF180P (100% identity) | M.RdeR2ORF423P | |
| ??? | V | V.RdePBS1ORF180P (92% identity) | V.RdeR2ORF423P | |
| 31 | 248 aa hypothetical protein | |||
| 2642 | 282 aa hypothetical protein | |||
| 2643 | M | M.RdeR5ORF18555P (100% identity) | RGATCY | M.RdeR2ORF2643P |
| 2644 | adenine-specific DNA methyltransferase | |||
| 1612 | 56 aa hypothetical protein | |||
| 1613 | M | M.RdePBS1ORF11160P (100% identity) | M.RdeR2ORF1613P | |
| 1614 | phage tail fiber assembly-like protein | |||
| 2479 | protein of unknown function DUF6 transmembrane | |||
| ??? | R | RdeR5ORF9560P (100% identity) | CTCGAG | RdeR2ORF2199P |
| 2481 | 582 aa hypothetical protein | |||
| ??? | Type II site-specific deoxyribonuclease | |||
| 2481 | M | M.RdePBS1ORF7850P (100% identity) | CTCGAG | M.RdeR2ORF2481P |
| 2482 | polysaccharide deacetylase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1036 | NERD domain protein | |||
| 1037 | R | RdePBS1ORF3675P (100% identity) | RdeR2ORF1038P | |
| 1038 | M | M.Rsp24678ORF7981P (96% identity) | M.RdeR2ORF1038P | |
| 1039 | 195 aa hypothetical protein | |||
| 238 | amino acid permease-associated region | |||
| 239 | R | RdePBS1ORF1265P (100% identity) | RdeR2ORF242P | |
| 240 | plasmid maintenance system killer | |||
| 241 | plasmid maintenance system antidote protein, XRE | |||
| 242 | M | M.Rsp24678ORF8833P (99% identity) | M.RdeR2ORF242P | |
| 243 | 142 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1821 | 243 aa hypothetical protein | |||
| 1822 | R | Rsp24678MrrP (100% identity) | RdeR2Mrr2P | |
| 1823 | 189 aa hypothetical protein | |||
| 1480 | metal dependent phosphohydrolase | |||
| 1481 | R | Mth10409MrrP (57% identity) | RdeR2MrrP | |
| 1482 | N-6 DNA methylase | |||