Helicobacter pylori B128 |
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Putative Helicobacter pylori B128 RM systems
Ref: McClain,M.S. et al. BMC Genomics 10, 3 (2009)
REBASE ref # 13845
Contig set: 1,649,221 bp
GenBank #: ABSY00000000 (NZ_ABSY00000000)
REBASE acronym: HpyB128
Org_num: 8037
All begin HPB128_10g, HPB128_149g, HPB128_14g, HPB128_151g, HPB128_156g, HPB128_159g, HPB128_164g, HPB128_165g, HPB128_16g, HPB128_175g, HPB128_179g, HPB128_180g, HPB128_182g, HPB128_186g, HPB128_189g, HPB128_193g, HPB128_199g, HPB128_1g, HPB128_202g, HPB128_21g, HPB128_2g, HPB128_4g
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 225 | 675 aa hypothetical protein | |||
| 226 | S | S.HpyR3cORF5365P (88% identity) | S.HpyB128ORF227P | |
| 227 | M | M.HpyR3cORF5365P (100% identity) | M.HpyB128ORF227P | |
| ??? | R | HpyR3cORF5365P (99% identity) | HpyB128ORF227P | |
| 232 | 631 aa hypothetical protein | |||
| 82 | 78 aa hypothetical protein | |||
| ??? | S | S.HpyR3cORF510P (100% identity) | S.HpyB128ORF84P | |
| 85 | 293 aa hypothetical protein | |||
| 62 | 499 aa hypothetical protein | |||
| 63 | S | S.HpyR3cORF4785P (40% identity) | S.HpyB128ORF63P | |
| 34 | 273 aa hypothetical protein | |||
| ??? | R | HpyR3cORF5080P (96% identity) | HpyB128ORF35P | |
| ??? | modification methylase BabI | |||
| 34 | 259 aa hypothetical protein | |||
| 35 | R | HpyR3cORF5080P (96% identity) | HpyB128ORF35P | |
| ??? | S | S.Hpy713ORFLP (100% identity) | S.HpyB128ORF3P | |
| 3 | M | M.HpyR3cORF8160P (100% identity) | M.HpyB128ORF3P | |
| ??? | R | HpyR3cORF8160P (97% identity) | HpyB128ORF3P | |
| 6 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 25 | 67 aa hypothetical protein | |||
| ??? | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyB128II |
| 27 | 144 aa hypothetical protein | |||
| 37 | 198 aa hypothetical protein | |||
| ??? | R | HpyB8ORF1299P (100% identity) | CCGG | HpyB128ORF40P |
| 40 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyB128ORF40P |
| 41 | 856 aa hypothetical protein | |||
| 52 | 355 aa hypothetical protein | |||
| ??? | M | M2.HpyR3cORF145P (100% identity) | GATGG | M1.HpyB128ORF54P |
| 54 | M | M1.HpyR3cORF145P (93% identity) | CCATC | M2.HpyB128ORF54P |
| 55 | R | HpyR3cORF145P (100% identity) | CCATC | HpyB128ORF54P |
| 56 | 371 aa hypothetical protein | |||
| 21 | 400 aa hypothetical protein | |||
| ??? | S | S.HpyR3cORF285P (100% identity) | S.HpyB128ORF24P | |
| 24 | 679 aa hypothetical protein | |||
| 73 | 145 aa hypothetical protein | |||
| ??? | RM | HpyR3cORF55P (100% identity) | HpyB128ORF74P | |
| ??? | hypothetical protein | |||
| 16 | 605 aa hypothetical protein | |||
| 17 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB128ORF18P |
| 18 | M | M.HpyB128KORF6730P (94% identity) | GTNNAC | M.HpyB128ORF18P |
| 19 | 675 aa hypothetical protein | |||
| 12 | 258 aa hypothetical protein | |||
| ??? | R | HpyC209ORF7680P (88% identity) | TGCA | HpyB128ORF13P |
| 15 | 433 aa hypothetical protein | |||
| 20 | 199 aa hypothetical protein | |||
| 21 | R | HpyR3cORF1995P (90% identity) | TCNNGA | HpyB128ORF22P |
| ??? | M | M.HpyR3cORF1995P (99% identity) | TCNNGA | M.HpyB128ORF22P |
| 24 | 458 aa hypothetical protein | |||
| 1 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M.HpyB128ORFDP |
| 2 | R | HpyR3cORF7300P (100% identity) | CCTC | HpyB128ORFDP |
| ??? | type II DNA modification enzyme | |||
| 2 | 419 aa hypothetical protein | |||
| ??? | M | M.HpyB8ORF1517P (100% identity) | GTSAC | M.HpyB128ORFBP |
| 5 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyB128ORFBP |
| 6 | 47 aa hypothetical protein | |||
| 7 | 146 aa hypothetical protein | |||
| ??? | M | M.HpyR3cORF7075P (100% identity) | GATC | M.HpyB128ORFEP |
| 10 | 309 aa hypothetical protein | |||
| 12 | 67 aa hypothetical protein | |||
| 13 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyB128ORF13P |
| ??? | R | HpyC209ORF7680P (88% identity) | TGCA | HpyB128ORF13P |
| 16 | 355 aa hypothetical protein | |||
| 1 | M | M.HpyR3cORF5085P (100% identity) | GGCC | M.HpyB128ORFAP |
| 2 | R | 199 aa hypothetical protein | GGCC | HpyB128ORFAP |
| 3 | 113 aa hypothetical protein | |||
| 1 | M | 432 aa hypothetical protein | TCNGA | M.HpyB128ORF1P |
| ??? | R | HpyU408XP (100% identity) | TCNGA | HpyB128ORF1P |
| 3 | 234 aa hypothetical protein | |||
| 3 | 599 aa hypothetical protein | |||
| ??? | M | M.HpyCOL6ORF2245P (93% identity) | ACNGT | M.HpyB128ORF4P |
| 6 | R | HpyB8ORF1100P (100% identity) | ACNGT | HpyB128ORF4P |
| 7 | 351 aa hypothetical protein | |||
| 6 | 170 aa hypothetical protein | |||
| 7 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyB128ORF7P |
| ??? | R | HpyR3cORF5260P (94% identity) | ACGT | HpyB128ORF7P |
| 10 | 314 aa hypothetical protein | |||
| 1 | M | 180 aa hypothetical protein | GAATTC | M.HpyB128ORFFP |
| 2 | 324 aa hypothetical protein | |||
| 1 | M | 80 aa hypothetical protein | TCNGA | M.HpyB128ORF1P |
| 1 | S | S.HpyR3cORF5080P (51% identity) | S.HpyB128ORF1P | |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | hypothetical protein | |||
| ??? | R | HpyR3cORF45P (99% identity) | HpyB128ORF79P | |
| ??? | M | M.HpyB128KORF40P (100% identity) | M.HpyB128ORF79P | |
| 82 | 613 aa hypothetical protein | |||
| 19 | 222 aa hypothetical protein | |||
| ??? | M | M.HpyR3cORF7375P (99% identity) | M.HpyB128ORF20P | |
| ??? | R | HpyR3cORF7375P (100% identity) | HpyB128ORF20P | |
| 24 | 171 aa hypothetical protein | |||
| 18 | 248 aa hypothetical protein | |||
| 19 | R | HpyR3cORF7375P (100% identity) | HpyB128ORF20P | |
| ??? | M | M.HpyR3cORF7375P (99% identity) | M.HpyB128ORF20P | |
| 23 | 213 aa hypothetical protein | |||
| 2 | 282 aa hypothetical protein | |||
| ??? | R | HpyR3cORF7440P (95% identity) | GTAC | HpyB128ORF5P |
| 5 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyB128ORF5P |
| 6 | 287 aa hypothetical protein | |||
| 4 | 85 aa hypothetical protein | |||
| 5 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyB128ORF5P |
| 6 | 773 aa hypothetical protein | |||