Prevotella intermedia 17 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Prevotella intermedia 17 RM systems
Ref: Heidelberg,J. et al. unpublished
REBASE ref # 14457
| Sequence length: | GenBank #: | |
| chromosome I: | 579,647 bp | CP003502 |
| chromosome II: | 2,119,790 bp | CP003503 |
REBASE acronym: Pin17
Org_num: 8812
All begin PIN17_, PIN17_A
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 401 | site-specific recombinase, phage integrase | |||
| 402 | S | S1.Pin172ORF2481P (69% identity) | S1.Pin17ORF406P | |
| 404 | 41 aa hypothetical protein | |||
| 403 | S | S.Pin17FV (100% identity) | S2.Pin17ORF406P | |
| 405 | 321 aa hypothetical protein | |||
| 406 | M | M.Pin17FV (100% identity) | M.Pin17ORF406P | |
| 407 | PF03235 family protein | |||
| 408 | R | Pin17FVP (100% identity) | Pin17ORF406P | |
| 409 | C | C.PinWW414ORF5835P (100% identity) | C.Pin17ORF406P | |
| 410 | transposase, IS4 family | |||
| chromosome II | ||||
| 474 | PF01863 family protein | |||
| 475 | R | Pin17FIVP (100% identity) | Pin17ORF476P | |
| 476 | M | M.Pin17FIV (97% identity) | M.Pin17ORF476P | |
| 477 | PF06250 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 248 | 964 aa hypothetical protein HMPREF9296_0159 | |||
| 249 | R | Pin17FIP (100% identity) | Pin17ORF250P | |
| 250 | M | M1.Pin17FI (100% identity) | GGATG | M1.Pin17ORF250P |
| 251 | M | M2.Pin17FI (100% identity) | GGATG | M2.Pin17ORF250P |
| 252 | PF14128 domain protein | |||
| 428 | SNF2 family N-terminal domain protein | |||
| 429 | RM | PdeF0115ORF8600P (97% identity) | Pin17ORF429P | |
| 430 | TaqI-like C-terminal specificity domain protein | |||
| chromosome II | ||||
| 42 | 62 aa hypothetical protein | |||
| 43 | M | M.Pin17FORF8660P (100% identity) | M.Pin17ORF43P | |
| 44 | thymidylate synthase | |||
| 892 | 47 aa hypothetical protein | |||
| 894 | M | M.Pin17FORF2975P (93% identity) | M.Pin17ORF894P | |
| 895 | thymidylate synthase | |||
| 1857 | 49 aa hypothetical protein | |||
| 1858 | M | M1.Pin17FII (100% identity) | GATC | M1.Pin17ORF1858P |
| 1859 | 174 aa hypothetical protein | |||
| 1860 | M | M2.Pin17FIIP (100% identity) | GATC | M2.Pin17ORF1858P |
| 1862 | LytB protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 96 | polyketide cyclase/dehydrase and lipid | |||
| 97 | R | Pin17FMcrBP (100% identity) | Pin17McrBP | |
| 98 | McrBC 5-methylcytosine restriction system | |||