Helicobacter pylori Shi112 |
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Putative Helicobacter pylori Shi112 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 14396
Complete sequence: 1,663,456 bp
GenBank #: CP003474
REBASE acronym: Hpy112
Org_num: 8759
All begin HPSH112_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2455 | polyphosphate kinase | |||
| 2465 | S | S.HpySH010ORF2440P (100% identity) | S.Hpy112ORF2470P | |
| 2470 | M | M.HpySH010ORF2440P (100% identity) | M.Hpy112ORF2470P | |
| ??? | R | HpySH010ORF2440P (99% identity) | Hpy112ORF2470P | |
| 2485 | 631 aa hypothetical protein | |||
| 3050 | cadmium-transporting ATPase | |||
| 3055 | S | S.HpySH007ORF2895P (98% identity) | S.Hpy112ORF3055P | |
| 3060 | outer membrane protein HofF | |||
| 7235 | 49 aa hypothetical protein | |||
| 7240 | S | S.HpySH010ORF7095P (100% identity) | S.Hpy112ORF7240P | |
| 7245 | formyltetrahydrofolate deformylase | |||
| 7740 | 30 aa hypothetical protein | |||
| 7745 | S | S.HpySH010ORF7600P (100% identity) | S.Hpy112ORF7755P | |
| 7750 | 251 aa hypothetical protein | |||
| ??? | M | M.HpySH010ORF7600P (99% identity) | M.Hpy112ORF7755P | |
| 7765 | R | HpySH010ORF7600P (99% identity) | Hpy112ORF7755P | |
| 7770 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 230 | 330 aa hypothetical protein | |||
| 235 | M | M1.HpySH010IV (99% identity) | CCTC | M1.Hpy112ORF235P |
| 240 | M | M1.Hpyfe78ORF6990P (79% identity) | CCTC | M2.Hpy112ORF235P |
| 245 | proline permease (putP) | |||
| 435 | malonyl CoA-acyl carrier protein transacylase | |||
| 440 | R | HpySH010IXP (100% identity) | GATC | Hpy112ORF445P |
| 445 | M | M.HpySH010IX (100% identity) | GATC | M.Hpy112ORF445P |
| 450 | alpha-1,2-fucosyltransferase | |||
| 1595 | exodeoxyribonuclease VII large subunit | |||
| 1600 | M | M.HpySH010XI (100% identity) | TCGA | M.Hpy112ORF1600P |
| 1605 | 204 aa hypothetical protein | |||
| 1605 | 204 aa hypothetical protein | |||
| 1610 | R | HpySH010IIIP (100% identity) | CCGG | Hpy112ORF1615P |
| 1615 | M | M.HpySH010III (100% identity) | CCGG | M.Hpy112ORF1615P |
| 1620 | ATP-dependent protease binding subunit ClpB | |||
| 1850 | 293 aa hypothetical protein | |||
| ??? | R | HpySORF1620P (99% identity) | CTNAG | Hpy112ORF1860P |
| 1860 | M | M.HpySH010V (100% identity) | CTNAG | M.Hpy112ORF1860P |
| 1865 | 118 aa hypothetical protein | |||
| 2030 | GTP-binding protein LepA | |||
| 2035 | M | M.HpySH014ORF1855P (100% identity) | GCNGC | M.Hpy112ORF2035P |
| 2040 | 156 aa hypothetical protein | |||
| 2205 | sec-independent translocase | |||
| 2210 | M | M.HpySH014ORF2030P (100% identity) | GDGCHC | M.Hpy112ORF2210P |
| 2215 | Holliday junction DNA helicase RuvB | |||
| 2545 | glutamyl-tRNA synthetase | |||
| 2560 | M | M.HpySH010II (99% identity) | ATTAAT | M.Hpy112ORF2560P |
| 2565 | type II adenine specific methyltransferase | |||
| 2570 | GTP-binding protein TypA | |||
| 2575 | M | M.HpySH010ORF2530P (100% identity) | ACGT | M.Hpy112ORF2575P |
| 2580 | catalase-like protein | |||
| 2740 | 225 aa hypothetical protein | |||
| 2745 | R | HpySORF2550P (100% identity) | GGCC | Hpy112ORF2750P |
| 2750 | M | M.HpySH010ORF2695P (100% identity) | GGCC | M.Hpy112ORF2750P |
| 2755 | type I restriction enzyme M protein | |||
| 3665 | 449 aa hypothetical protein | |||
| 3670 | RM | HpySH010ORF3570P (60% identity) | Hpy112ORF3670P | |
| 3675 | 633 aa hypothetical protein | |||
| 3670 | 981 aa hypothetical protein | |||
| 3675 | RM | HpySH010ORF3570P (38% identity) | Hpy112ORF3675P | |
| 3680 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| 4730 | flagellar hook protein FlgE | |||
| 4735 | M | M.Hpy120ORF4485P (99% identity) | GTNNAC | M.Hpy112ORF4735P |
| 4740 | rep helicase, single-stranded DNA-dependent | |||
| 5550 | 144 aa hypothetical protein | |||
| 5555 | M | M.HpySH010ORF5445P (100% identity) | GCGC | M.Hpy112ORF5555P |
| 5560 | flgM protein | |||
| 6020 | 222 aa hypothetical protein | |||
| 6025 | M | M.HpySH010I (100% identity) | CATG | M.Hpy112ORF6025P |
| 6030 | 47 aa hypothetical protein | |||
| 6775 | adenine specific DNA methyltransferase | |||
| 6780 | R | HpySH010VIIIP (100% identity) | GANTC | Hpy112ORF6775P |
| 6785 | M | M.HpySH014VIII (100% identity) | GANTC | M.Hpy112ORF6775P |
| ??? | adenine specific DNA methyltransferase | |||
| 6785 | adenine specific DNA methyltransferase | |||
| ??? | RM | Hpy464ORF6560P (97% identity) | Hpy112ORF6790P | |
| 6795 | nicotinate-nucleotide pyrophosphorylase | |||
| 6845 | transcriptional regulator | |||
| 6850 | R | HpySH010VIP (100% identity) | GAAGA | Hpy112ORF6855P |
| 6855 | M | M1.HpySH010VI (100% identity) | GAAGA | M1.Hpy112ORF6855P |
| 6860 | M | M2.HpySH010VI (100% identity) | GAAGA | M2.Hpy112ORF6855P |
| 6865 | adenine-specific DNA methylase | |||
| 7155 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7160 | M | M.HpySH010VII (100% identity) | GAATTC | M.Hpy112ORF7160P |
| 7165 | R | HpyTW03VIIP (99% identity) | GAATTC | Hpy112ORF7160P |
| 7170 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7445 | DNA polymerase I | |||
| 7450 | S | S.HpySH010ORF7310P (97% identity) | S.Hpy112ORF7455P | |
| 7455 | RM | HpySH010ORF7310P (100% identity) | Hpy112ORF7455P | |
| 7460 | 191 aa hypothetical protein | |||
| 7665 | transcription elongation factor NusA | |||
| 7670 | RM | HpySH010ORF7520P (100% identity) | Hpy112ORF7670P | |
| 7675 | type III restriction enzyme | |||
| 7865 | 67 aa hypothetical protein | |||
| 7870 | M | M.HpySH011XI (100% identity) | TGCA | M.Hpy112ORF7870P |
| 7875 | R | HpySH010XIIP (100% identity) | TGCA | Hpy112ORF7870P |
| 7880 | R4 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6860 | type IIS restriction enzyme M2 protein (mod) | |||
| ??? | M | M.HpySH010ORF6725P (100% identity) | M.Hpy112ORF6865P | |
| 6875 | R | HpySH010ORF6725P (100% identity) | Hpy112ORF6865P | |
| 6880 | rod shape-determining protein MreC | |||
| 6930 | endonuclease | |||
| 6935 | M | type III restriction enzyme M protein | M.Hpy112ORF6935P | |
| 6940 | biotin synthase | |||
| 7670 | type IIS restriction-modification | |||
| 7675 | R | HpySH010ORF7530P (100% identity) | Hpy112ORF7680P | |
| ??? | M | M.HpyPU001ORF7350P (97% identity) | M.Hpy112ORF7680P | |
| 7690 | ATP-dependent DNA helicase RecG | |||