Helicobacter cetorum MIT 00-7128 |
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Putative Helicobacter cetorum MIT 00-7128 RM systems
Ref: Kersulyte,D. and Berg,D.E. unpublished
REBASE ref # 14430
Complete sequence: 1,947,646 bp
GenBank #: CP003479
REBASE acronym: Hce7128
Org_num: 8768
All begin HCW_, HCW_r
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1645 | secreted motility protein | |||
| 1650 | S | S.Cje11353ORF7850P (39% identity) | S.Hce7128ORF1650P | |
| 1655 | cytochrome c551 peroxidase | |||
| 4090 | 357 aa hypothetical protein | |||
| ??? | S | S.HpyPO102ORF3350P (91% identity) | S.Hce7128ORF4105P | |
| 4105 | M | M.HpySW15ORF2205P (81% identity) | M.Hce7128ORF4105P | |
| ??? | R | type III restriction enzyme, res subunit | Hce7128ORF4105P | |
| 4125 | 171 aa hypothetical protein | |||
| 4555 | Holliday junction resolvase-like protein | |||
| 4560 | M | type I restriction-modification system, M | M.Hce7128ORF4560P | |
| 4565 | S | S.Hce99ORF2110P (97% identity) | S.Hce7128ORF4560P | |
| 4570 | 267 aa hypothetical protein | |||
| 7575 | 97 aa hypothetical protein | |||
| ??? | S | S.HpyUM067ORF8710P (15% identity) | S.Hce7128ORF7580P | |
| 7590 | rhodanese-related sulfur transferase | |||
| 8450 | methionyl-tRNA formyltransferase | |||
| 8465 | R | CupORF1391P (30% identity) | Hce7128ORF8480P | |
| 8470 | S | S.HpyI019ORF3890P (29% identity) | S.Hce7128ORF8480P | |
| 8475 | 133 aa hypothetical protein | |||
| ??? | M | type I restriction enzyme M protein | M.Hce7128ORF8480P | |
| 8490 | ABC transporter permease, amino-acid transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 595 | 208 aa hypothetical protein | |||
| 600 | M | M.Hce99ORF3935P (97% identity) | CATG | M.Hce7128ORF600P |
| 605 | 390 aa hypothetical protein | |||
| 1010 | 64 aa hypothetical protein | |||
| 1015 | S | S.HpyL021ORF7185P (47% identity) | S.Hce7128ORF1020P | |
| 1020 | RM | type II restriction modification enzyme | Hce7128ORF1020P | |
| 1025 | 67 aa hypothetical protein | |||
| 1245 | prephenate dehydratase | |||
| ??? | R | Ani7299ORF2986P (62% identity) | GATC | Hce7128ORF1270P |
| 1270 | M | M.Hce99ORF8595P (86% identity) | GATC | M.Hce7128ORF1270P |
| 1275 | branched-chain amino acid aminotransferase | |||
| 1285 | DNA polymerase I | |||
| 1290 | RM | AfeH2ORF8895P (29% identity) | Hce7128ORF1290P | |
| 1295 | helicase | |||
| 1425 | outer membrane protein HopK | |||
| ??? | R | Hce99ORF1910P (62% identity) | Hce7128ORF1440P | |
| ??? | M | M1.Hce99ORF1910P (48% identity) | M.Hce7128ORF1440P | |
| 1455 | 134 aa hypothetical protein | |||
| 2250 | UGMP family protein | |||
| 2255 | M | M1.Hce99ORF8570P (87% identity) | CCTC | M1.Hce7128ORF2255P |
| 2260 | M | M2.Hce99ORF8570P (88% identity) | CCTC | M2.Hce7128ORF2255P |
| ??? | R | Hce99ORF8570P (74% identity) | CCTC | Hce7128ORF2255P |
| 2275 | 30S ribosomal protein S9 | |||
| 3435 | sec-independent translocase | |||
| 3440 | R | Hce99ORF4450P (62% identity) | CCATC | Hce7128ORF3445P |
| 3445 | M | M1.HpyU409IV (89% identity) | CCATC | M2.Hce7128ORF3445P |
| 3450 | M | M1.HpyH010VI (88% identity) | GATGG | M1.Hce7128ORF3445P |
| 3455 | Holliday junction DNA helicase RuvB | |||
| 3835 | cysteine-rich protein D | |||
| ??? | R | HpyGCT27ORF1545P (76% identity) | GTAC | Hce7128ORFAP |
| ??? | M | 278 aa hypothetical protein | GTAC | M.Hce7128ORFAP |
| 3870 | DNA gyrase subunit B | |||
| 3965 | iron (III) dicitrate transport protein | |||
| 3970 | R | R2.IalLW1ORF2748P (43% identity) | Hce7128ORF3970P | |
| 3975 | 253 aa hypothetical protein | |||
| 3995 | purine-nucleoside phosphorylase | |||
| 4000 | RM | Hth7ORF3640P (40% identity) | Hce7128ORF4000P | |
| 4005 | 30 aa hypothetical protein | |||
| 4930 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate | |||
| 4935 | R | Hce99ORF2400P (82% identity) | CCGG | Hce7128ORF4940P |
| 4940 | M | M.Hce99ORF2400P (96% identity) | CCGG | M.Hce7128ORF4940P |
| 4945 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 5100 | phosphoheptose isomerase | |||
| 5105 | M | M.CthGBORF1153P (64% identity) | GGNCC | M.Hce7128ORF5105P |
| 5110 | R | DspBuS5ORF872P (58% identity) | GGNCC | Hce7128ORF5105P |
| 5115 | 612 aa hypothetical protein | |||
| 6050 | 362 aa hypothetical protein | |||
| 6055 | M | type II adenine specific methyltransferase | ATTAAT | M.Hce7128ORF6055P |
| ??? | 285 aa hypothetical protein | |||
| 6440 | 4-oxalocrotonate tautomerase | |||
| 6445 | M | M.Hce99ORF2745P (71% identity) | M.Hce7128ORF6445P | |
| 6450 | 481 aa hypothetical protein | |||
| 6600 | 144 aa hypothetical protein | |||
| 6605 | RM | 1608 aa hypothetical protein | Hce7128ORF6605P | |
| 6610 | 355 aa hypothetical protein | |||
| 7445 | flagellar hook protein FlgE | |||
| 7450 | M | M.Hce99ORF1925P (95% identity) | GTNNAC | M.Hce7128ORF7450P |
| 7455 | ATP-dependent DNA helicase | |||
| 7490 | 210 aa hypothetical protein | |||
| 7495 | RM | Hce99ORF1155P (90% identity) | Hce7128ORF7495P | |
| 8928 | pseudogene | |||
| 8010 | glucose-6-phosphate isomerase | |||
| ??? | M | M2.Aro10801ORF909P (33% identity) | M.Hce7128ORF8015P | |
| 8025 | cytosine specific DNA methyltransferase | |||
| 8030 | R | HceORFAP (100% identity) | Hce7128ORF8015P | |
| 8035 | 109 aa hypothetical protein | |||
| ??? | N-6 DNA methylase | |||
| 8025 | M | M.HceORFAP (100% identity) | CCTC | M.Hce7128ORF8025P |
| 8030 | 542 aa hypothetical protein | |||
| 8610 | 427 aa hypothetical protein | |||
| 8615 | M | M.Hce99ORF7405P (94% identity) | TCNNGA | M.Hce7128ORF8615P |
| 8620 | R | Hce99ORF7405P (98% identity) | TCNNGA | Hce7128ORF8615P |
| 8625 | excinuclease ABC subunit B | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5350 | dihydrodipicolinate reductase | |||
| ??? | M | M.HpySP801ORF6960P (55% identity) | M.Hce7128ORF5355P | |
| 5365 | R | type III restriction-modification system StyLTI | Hce7128ORF5355P | |
| 5370 | GTP-binding protein TypA | |||
| 8325 | secreted protein | |||
| 8330 | M | M.HpySW33ORF1770P (82% identity) | M.Hce7128ORF8330P | |
| 8335 | R | Hfe13102ORF1625P (33% identity) | Hce7128ORF8330P | |
| 8340 | flagellar hook-associated protein FlgK | |||