Helicobacter pylori ELS37 |
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Putative Helicobacter pylori ELS37 RM systems
Ref: Bertoli,M.T. et al. unpublished
REBASE ref # 14159
Complete sequence: 1,664,587 bp
GenBank #: CP002953
REBASE acronym: Hpy37
Org_num: 8573
All begin HPELS_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2265 | integral membrane protein | |||
| ??? | M | M.HpyNCI53ORFUP (90% identity) | M.Hpy37ORF2270P | |
| ??? | S | S.HpyDO4XV (72% identity) | S.Hpy37ORF2270P | |
| 2285 | R | HpyH003ORF4195P (96% identity) | Hpy37ORF2270P | |
| 2290 | hydroxyethylthiazole kinase | |||
| 2565 | Cadmium, zinc and cobalt-transporting ATPase | |||
| 2570 | S | S.HpySG24ORF2880P (69% identity) | S.Hpy37ORF2570P | |
| 2575 | outer membrane protein HofF | |||
| 4535 | 631 aa hypothetical protein | |||
| ??? | R | HpyF002ORF2155P (90% identity) | Hpy37ORF4550P | |
| 4550 | M | M.HpyH011ORF2170P (96% identity) | M.Hpy37ORF4550P | |
| 4555 | S | S.HpyK047ORF2230P (97% identity) | S.Hpy37ORF4550P | |
| 4560 | polyphosphate kinase | |||
| 7890 | cagY like protein | |||
| 7895 | M | M.HpyF009XVII (63% identity) | M.Hpy37ORF7895P | |
| ??? | R | HpyNCI28ORFLP (96% identity) | Hpy37ORF7895P | |
| 7910 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | 330 aa hypothetical protein | |||
| 245 | M | M1.HpySP304VII (95% identity) | CCTC | M1.Hpy37ORF245P |
| 250 | M | M2.HpySP320VP (98% identity) | CCTC | M2.Hpy37ORF245P |
| ??? | 419 aa hypothetical protein L934_03840 | |||
| 250 | type II DNA modification enzyme | |||
| ??? | R | HpySP807VP (99% identity) | CCTTC | Hpy37ORF265P |
| 265 | M | M.HpySP14IX (98% identity) | CCTTC | M.Hpy37ORF265P |
| 270 | sodium/proline symporter | |||
| 465 | malonyl CoA-acyl carrier protein transacylase | |||
| 475 | R | HpySP404IXP (100% identity) | GATC | Hpy37ORF480P |
| 480 | M | M.HpyU101V (97% identity) | GATC | M.Hpy37ORF480P |
| 495 | 176 aa hypothetical protein | |||
| 895 | elongation factor P | |||
| 900 | M | M1.HpySP319ORF860P (100% identity) | M.Hpy37ORF900P | |
| 915 | IS200 insertion sequence from SARA17 | |||
| 1050 | 67 aa hypothetical protein | |||
| 1055 | M | M.HpyH011XII (97% identity) | GCGC | M.Hpy37ORF1055P |
| 1060 | 144 aa hypothetical protein | |||
| 1245 | 199 aa hypothetical protein | |||
| ??? | R | HpyH011ORF5050P (100% identity) | TCNNGA | Hpy37ORFCP |
| ??? | M | M.HpyH005ORF5270P (98% identity) | TCNNGA | M.Hpy37ORFCP |
| 1270 | biotin carboxylase | |||
| 1955 | rep helicase, single-stranded DNA-dependent | |||
| 1960 | M | M.HpyU406IX (97% identity) | GTNNAC | M.Hpy37ORF1960P |
| 1965 | R | HpyK009VIP (91% identity) | GTNNAC | Hpy37ORF1960P |
| 1970 | flagellar hook protein FlgE | |||
| 2865 | 67 aa hypothetical protein | |||
| 2870 | M | M2.HpyU203ORF3725P (100% identity) | GACGC | M1.Hpy37ORF2870P |
| 2875 | M | M1.HpyU305ORF3485P (100% identity) | GACGC | M2.Hpy37ORF2870P |
| 2880 | R | HpyU305ORF3485P (100% identity) | GACGC | Hpy37ORF2870P |
| 2885 | 101 aa hypothetical protein | |||
| 3075 | 166 aa hypothetical protein | |||
| 3080 | R | HpyPOR115IVP (99% identity) | CCNNGG | Hpy37ORF3085P |
| 3085 | M | M.HpyPO08VII (99% identity) | CCNNGG | M.Hpy37ORF3085P |
| 3090 | 270 aa hypothetical protein | |||
| 3185 | 823 aa hypothetical protein | |||
| ??? | RM | HpyH009ORF3320P (94% identity) | Hpy37ORF3190P | |
| 3200 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| 4090 | outer membrane protein | |||
| 4095 | R | 85 aa hypothetical protein | GTAC | Hpy37ORF4095P |
| 4100 | 262 aa hypothetical protein | |||
| 4340 | outer membrane protein | |||
| 4345 | R | HpyH027XP (99% identity) | GTAC | Hpy37ORF4350P |
| 4350 | M | M.HpyH027X (99% identity) | GTAC | M.Hpy37ORF4350P |
| 4355 | DNA gyrase subunit B | |||
| 4440 | catalase-like protein | |||
| 4445 | M | M.HpyNCI56ORFIP (98% identity) | ACGT | M.Hpy37ORF4445P |
| 4450 | type II restriction endonuclease | |||
| 4445 | type II DNA modification (methyltransferase) | |||
| 4450 | R | HpyDO5ORF2255P (81% identity) | ACNGT | Hpy37ORF4455P |
| 4455 | M | M.HpyH011II (100% identity) | ACNGT | M.Hpy37ORF4455P |
| 4460 | GTP-binding protein TypA | |||
| 4465 | non-functional type II restriction | |||
| 4470 | M | type II DNA modification (methyltransferase) | ATTAAT | M2.Hpy37ORF4465P |
| 4475 | 369 aa hypothetical protein | |||
| 5425 | ATP-dependent protease binding subunit / | |||
| ??? | M | M.HpyU434IV (99% identity) | CCGG | M.Hpy37ORFDP |
| ??? | R | 75 aa hypothetical protein HMPREF1402_01026 | CCGG | Hpy37ORFDP |
| 5455 | 204 aa hypothetical protein | |||
| 5455 | 204 aa hypothetical protein | |||
| 5460 | M | M.HpyH015XIV (98% identity) | TCGA | M.Hpy37ORF5460P |
| 5465 | exodeoxyribonuclease VII large subunit | |||
| 5885 | sialic acid synthase | |||
| ??? | R | LlaJI restriction endonuclease | Hpy37ORFBP | |
| ??? | restriction enzyme | |||
| 6270 | haloacid dehalogenase | |||
| 6275 | M | M.HpyH005I (100% identity) | CATG | M.Hpy37ORF6275P |
| ??? | R | HpyCOL119IP (99% identity) | CATG | Hpy37ORF6275P |
| 6295 | serine acetyltransferase | |||
| 7005 | carboxyl-terminal protease | |||
| 7010 | R | HpySP108VIP (97% identity) | GANTC | Hpy37ORF7015P |
| 7015 | M | M.HpyU413VI (99% identity) | GANTC | M.Hpy37ORF7015P |
| 7020 | adenine specific DNA methyltransferase | |||
| 7015 | adenine specific DNA methyltransferase (HINFIM) | |||
| ??? | RM | HpyDO2ORF620P (91% identity) | Hpy37ORF7020P | |
| 7030 | nicotinate-nucleotide pyrophosphorylase | |||
| 7080 | OmpR family two-component system response | |||
| ??? | R | HpyH009VIIP (97% identity) | GAAGA | Hpy37ORF7100P |
| 7100 | M | M2.HpyNCI2aII (98% identity) | GAAGA | M1.Hpy37ORF7100P |
| ??? | M | M2.HpyU204VIII (94% identity) | GAAGA | M2.Hpy37ORF7100P |
| 7115 | type III R-M system methyltransferase | |||
| 7575 | DNA polymerase I | |||
| 7580 | S | S.Hpy1169ORF2365P (91% identity) | S.Hpy37ORF7585P | |
| 7585 | RM | HpyH007ORF7220P (98% identity) | Hpy37ORF7585P | |
| 7590 | 191 aa hypothetical protein | |||
| 7815 | 30 aa hypothetical protein | |||
| ??? | RM | HpyPR07ORF7410P (77% identity) | Hpy37ORFAP | |
| 7830 | type III restriction enzyme R protein (res) | |||
| 7995 | 67 aa hypothetical protein | |||
| 8000 | M | M.HpyME32XI (100% identity) | TGCA | M.Hpy37ORF8000P |
| 8005 | R | HpyH011XIP (99% identity) | TGCA | Hpy37ORF8000P |
| 8010 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | DNA -methyltransferase | |||
| 7115 | M | M.HpyPE109ORF6560P (94% identity) | M.Hpy37ORF7115P | |
| 7120 | R | HpyT023ORF6730P (89% identity) | Hpy37ORF7115P | |
| 7125 | rod shape-determining protein MreC | |||
| 7175 | endonuclease G | |||
| 7180 | M | M.HpyMT5105ORF7485P (95% identity) | M.Hpy37ORF7180P | |
| 7185 | R | HpyGORF1327P (93% identity) | Hpy37ORF7180P | |
| 7190 | biotin synthase | |||
| ??? | type IIS restriction-modification protein | |||
| 7830 | R | HpyOK317ORFLP (94% identity) | Hpy37ORF7835P | |
| 7835 | M | M.HpySP107ORF7310P (96% identity) | M.Hpy37ORF7835P | |
| 7840 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | LlaJI restriction endonuclease | |||
| ??? | R | R1.HpyH011ORF860P (99% identity) | Hpy37McrBP | |
| 5910 | IS606 transposase | |||