Environmental sample Richmond Mine |
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Putative Environmental sample Richmond Mine RM systems
Ref: Tyson,G.W. et al. Nature 428 (6978), 37-43 (2004)
REBASE ref # 8516
GenBank #: AADL00000000
REBASE acronym: EsaRM
Org_num: 3882
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.UbaMDORFF3P (50% identity) | S.EsaRM29ORFAP | |
| ??? | M | M.EsaRM30ORFAP (90% identity) | M.EsaRM29ORFAP | |
| ??? | M | M.NpuORF3329P (36% identity) | M.EsaRM40ORFAP | |
| ??? | M | M.LfeC23ORF624P (85% identity) | M.EsaRM44ORFAP | |
| ??? | M | M.Cdi30642ORF1437P (87% identity) | M.EsaRM74ORFAP | |
| ??? | R | UbaMDORFM8P (46% identity) | EsaRM51ORFAP | |
| ??? | S | S.EsaRM12ORFAP (45% identity) | S.EsaRM75ORFAP | |
| ??? | M | M.Cdi30642ORF1437P (96% identity) | M.EsaRM75ORFAP | |
| ??? | R | UbaMDORFM8P (28% identity) | EsaRM28ORFAP | |
| ??? | M | M.FacAORFBP (49% identity) | M.EsaRM62ORFAP | |
| ??? | S | S.FacAORFBP (100% identity) | S.EsaRM62ORFAP | |
| ??? | R | FacAORFBP (99% identity) | EsaRM62ORFAP | |
| ??? | R | OapP3M1ORF2580P (16% identity) | EsaRM8ORFAP | |
| ??? | S | S.Cdi30642ORF1437P (96% identity) | S.EsaRM12ORFAP | |
| ??? | R | Cdi30642ORF1437P (99% identity) | EsaRM12ORFAP | |
| ??? | R | FacFer1ORF1414P (94% identity) | EsaRM73ORFAP | |
| ??? | R | UbaMDORFV9P (32% identity) | EsaRM52ORFAP | |
| ??? | M | M.UbaMDORFO8P (75% identity) | M.EsaRM45ORFAP | |
| ??? | S | S.EsaRM34ORFAP (75% identity) | S.EsaRM33ORFAP | |
| ??? | M | M.Bce842ORF4160P (74% identity) | M.EsaRM33ORFAP | |
| ??? | R | UbaMDORFA10P (84% identity) | EsaRM33ORFAP | |
| ??? | S | S.UbaMDORFL8P (46% identity) | S.EsaRM30ORFAP | |
| ??? | M | M.EsaRM29ORFAP (90% identity) | M.EsaRM30ORFAP | |
| ??? | S | S.EsaRM33ORFAP (75% identity) | S.EsaRM34ORFAP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | UbaMDORFB3P (21% identity) | EsaRM41ORFAP | |
| ??? | M | M.UbaMDORFU6P (69% identity) | CATG | M.EsaRM69ORFAP |
| ??? | M | M.CdiPM4ORF1581P (78% identity) | GATC | M.EsaRM21ORFAP |
| ??? | M | M.Cdi30642ORF1591P (56% identity) | GANTC | M.EsaRM16ORFAP |
| ??? | M | M.TsyJLORFDP (27% identity) | GTAC | M.EsaRM13ORFAP |
| ??? | M | M.UbaMDORFF11P (74% identity) | CTCGAG | M.EsaRM38ORFAP |
| ??? | RM | UbaMDORFB3P (25% identity) | EsaRM48ORFAP | |
| ??? | RM | UbaMDORFY9P (27% identity) | EsaRM57ORFAP | |
| ??? | M | M.UbaMDORFT10P (73% identity) | M.EsaRM68ORFAP | |
| ??? | RM | UbaMDORFB3P (23% identity) | EsaRM49ORFAP | |
| ??? | RM | LfeYSKORF3470P (18% identity) | EsaRM55ORFAP | |
| ??? | RM | LfeYSKORF3470P (29% identity) | EsaRM56ORFAP | |
| ??? | R | FacAORFFP (100% identity) | GGNCC | EsaRM61ORFAP |
| ??? | M | M.TarIpORFJP (9% identity) | TCTAGA | M.EsaRM17ORFAP |
| ??? | RM | UbaMDORFM11P (78% identity) | EsaRM15ORFAP | |
| ??? | M | M.UbaMDORFM6P (98% identity) | M.EsaRM4ORFAP | |
| ??? | R | UbaMDORFF11P (50% identity) | CTCGAG | EsaRM37ORFAP |
| ??? | RM | TarEpORFBP (59% identity) | EsaRM18ORFAP | |
| ??? | M | M.UbaMDORFQ10P (85% identity) | CGCG | M.EsaRM67ORFAP |
| ??? | R | UbaMDORFU9P (76% identity) | CGCG | EsaRM67ORFAP |
| ??? | RM | LfeML04ORF27P (82% identity) | EsaRM35ORFAP | |
| ??? | RM | UbaMDORFC1P (71% identity) | EsaRM47ORFAP | |
| ??? | M | M.Cdi30642ORF1430P (100% identity) | M.EsaRM22ORFAP | |
| ??? | R | GbaPX52ORF3096P (47% identity) | CTCGAG | EsaRM31ORFAP |
| ??? | M | M.CphBORF117P (59% identity) | CTCGAG | M.EsaRM31ORFAP |
| ??? | M | M.FacYORF312P (49% identity) | GGNCC | M.EsaRM61ORFAP |
| ??? | M | M.FacAORFAP (100% identity) | M.EsaRM58ORFAP | |
| ??? | M | M.Cdi30642ORF1389P (99% identity) | M.EsaRM72ORFAP | |
| ??? | RM | LspCF1ORF90P (99% identity) | EsaRM23ORFAP | |
| ??? | M | M.Lfe14647ORF1134P (99% identity) | GGATC | M.EsaRM1ORFAP |
| ??? | M | M.FacAORFAP (82% identity) | M.EsaRM64ORFAP | |
| ??? | RM | LspCF1ORF11740P (100% identity) | EsaRM24ORFAP | |
| ??? | M | M.Mhu64FGQORF4200P (29% identity) | GGTNACC | M.EsaRM65ORFAP |
| ??? | R | FacYORF312P (74% identity) | GGNCC | EsaRM63ORFAP |
| ??? | M | M.FacYORF312P (69% identity) | GGNCC | M.EsaRM63ORFAP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | FacFer1ORF1390P (27% identity) | EsaRM59ORFAP | |
| ??? | M | M.FacFer1ORF1390P (30% identity) | M.EsaRM59ORFAP | |
| ??? | M | M.FacFer1ORF1390P (30% identity) | M.EsaRM60ORFAP | |
| ??? | R | UbaMDORFS11P (7% identity) | EsaRM9ORFAP | |
| ??? | M | M.UbaMDORFQ6P (100% identity) | M.EsaRM9ORFAP | |
| ??? | R | UbaMDORFB10P (85% identity) | EsaRM27ORFAP | |
| ??? | R | UbaMDORFV10P (67% identity) | EsaRM66ORFAP | |
| ??? | R | UbaMDORFQ11P (59% identity) | EsaRM20ORFAP | |
| ??? | M | M.UbaMDORFQ11P (69% identity) | M.EsaRM19ORFAP | |
| ??? | M | M.Cdi30642ORF85P (26% identity) | M.EsaRM5ORFAP | |
| ??? | R | TarIpORFDP (51% identity) | EsaRM71ORFAP | |
| ??? | M | M.TarIpORFDP (41% identity) | M.EsaRM70ORFAP | |
| ??? | M | M.UbaMDORFS11P (46% identity) | M.EsaRM11ORFAP | |
| ??? | R | UbaMDORFS11P (95% identity) | EsaRM14ORFAP | |
| ??? | M | M.UbaMDORFS11P (57% identity) | M.EsaRM14ORFAP | |
| ??? | M | M.EsaRM39ORFAP (84% identity) | M.EsaRM36ORFAP | |
| ??? | M | M.EsaRM36ORFAP (84% identity) | M.EsaRM39ORFAP | |
| ??? | M | M.LfeML04ORF2041P (100% identity) | M.EsaRM3ORFAP | |
| ??? | M | M.UbaMDORFV6P (72% identity) | M.EsaRM26ORFAP | |
| ??? | R | UbaMDORFV6P (39% identity) | EsaRM26ORFAP | |
| ??? | R | UbaMDORFS11P (70% identity) | EsaRMORF10P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | UbaMDMrr2P (74% identity) | EsaRM25MrrP | |
| ??? | R | LspCF1MrrP (100% identity) | EsaRM32MrrP | |
| ??? | R | LspCF1MrrP (94% identity) | EsaRM54MrrP | |