Salmonella enterica subsp. enterica serovar Typhi P-stx-12 |
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Putative Salmonella enterica subsp. enterica serovar Typhi P-stx-12 RM systems
Ref: Ong,S.Y. et al. unpublished
REBASE ref # 14196
| Sequence length: | GenBank #: | |
| Chromosome: | 4,768,352 bp | CP003278 |
| plasmid unnamed: | 181,431 bp | CP003279 |
REBASE acronym: Sen12
Org_num: 8595
All begin STBHUCCB_, STBHUCCB_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 48260 | Endoribonuclease symE | |||
| 48270 | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.Sen12ORF48290P |
| 48290 | M | M.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | M.Sen12ORF48290P |
| 48300 | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen12ORF48290P |
| 48310 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9510 | 231 aa hypothetical protein | |||
| 9520 | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen12DcmP |
| 9530 | V | V.StyTDcmP (100% identity) | V.Sen12DcmP | |
| 9540 | inner membrane transporter yedA | |||
| 20260 | 190 aa hypothetical protein | |||
| 20270 | M | M.StyTORF1914P (100% identity) | M.Sen12ORF20270P | |
| 20280 | 174 aa hypothetical protein | |||
| 34890 | DNA-binding protein fis | |||
| 34900 | M | adenine-specific methylase | ATGCAT | M.Sen12ORF34900P |
| 34910 | 54 aa hypothetical protein | |||
| 42540 | 425 aa hypothetical protein | |||
| 42550 | M | DNA adenine methylase | GATC | M.Sen12DamP |
| 42560 | Ribulose-phosphate 3-epimerase | |||
| plasmid unnamed | ||||
| 850 | 273 aa hypothetical protein | |||
| 860 | M | M.Ype21801ORF197P (100% identity) | M1.Sen12ORF860P | |
| 870 | DNA-binding plasmid partitioning protein | |||
| 2010 | nuclease-like protein | |||
| 2020 | M | M.StypAKU1ORFCP (100% identity) | CCWGG | M.Sen12ORF2020P |
| 2030 | 55 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9360 | Prepilin-type N-cleavage/methylation domain | |||
| 9370 | R | StyTORF872P (100% identity) | Sen12ORF9380P | |
| 9380 | M | M.SmaBWH35ORF16840P (100% identity) | M.Sen12ORF9380P | |
| 9390 | 462 aa hypothetical protein | |||
| 26530 | Cytochrome bd ubiquinol oxidase, subunit I | |||
| ??? | R | StyTORF2507P (100% identity) | CAGAG | Sen12ORF26560P |
| 26560 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen12ORF26560P |
| 26570 | Major facilitator superfamily (MFS_1) | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 48300 | Type I restriction enzyme EcoKI R protein | |||
| 48310 | R | StyTMrrP (100% identity) | Sen12MrrP | |
| 48320 | 95 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20370 | 354 aa hypothetical protein | |||
| ??? | M | M.StyTORF1926P (100% identity) | GATC | M.Sen12ORF20380P |
| 20390 | phage excisionase | |||
| 35910 | 75 aa hypothetical protein | |||
| 35920 | M | M.StyTORF3409P (100% identity) | GATC | M.Sen12ORF35920P |
| 35930 | replication endonuclease from prophage-like | |||
| 45840 | pseudogene | |||
| 45850 | M | M.StyTORF4329P (100% identity) | GATC | M.Sen12ORF45850P |
| 45860 | Exonuclease | |||