Gardnerella vaginalis 5-1 |
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Putative Gardnerella vaginalis 5-1 RM systems
Ref: Harwich,M.D. Jr. et al. BMC Genomics 11, 375 (2010)
REBASE ref # 14712
Contig set: 1,672,842 bp
GenBank #: ADAN00000000 (NZ_ADAN00000000)
REBASE acronym: Gva51
Org_num: 8166
All begin GV51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 346 | thiamine biosynthesis membrane-associated | |||
| 345 | M | M.Gva9231ORF162P (94% identity) | M.Gva51ORF345P | |
| 344 | S | S.GvaFY1ORF4425P (66% identity) | S.Gva51ORF345P | |
| 343 | R | Gsp1001IP (95% identity) | Gva51ORF345P | |
| 342 | high-affinity Fe2+/Pb2+ permease | |||
| 56 | transcription-repair coupling factor | |||
| 57 | C | C.GpiFY15ORF3425P (78% identity) | C.Gva51ORF58P | |
| 58 | M | M.Gsp1189ORF1510P (97% identity) | M.Gva51ORF58P | |
| 59 | S | S.Gsp1189ORF1510P (70% identity) | S.Gva51ORF58P | |
| 60 | R | Gsp1189ORF1510P (99% identity) | Gva51ORF58P | |
| 61 | ABC-type uncharacterized transporter, | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 916 | 53 aa hypothetical protein | |||
| 915 | R | Gsp771IIP (100% identity) | CTTAAG | Gva51ORF914P |
| 914 | M | M.Gsp771II (99% identity) | CTTAAG | M.Gva51ORF914P |
| 913 | 386 aa hypothetical protein | |||
| 919 | 254 aa hypothetical protein | |||
| 917 | RM | Gsp1180PORF3270P (59% identity) | Gva51ORF919BP | |
| 916 | 53 aa hypothetical protein | |||
| 915 | 298 aa hypothetical protein | |||
| 914 | modification methylase AccI | |||
| 913 | RM | Gva37ORF4525P (40% identity) | Gva51ORF919AP | |
| 912 | P-loop ATPase | |||
| 1130 | 261 aa hypothetical protein | |||
| 1129 | M | DNA methylase | M.Gva51ORF1129P | |
| 513 | 255 aa hypothetical protein | |||
| 1136 | 61 aa hypothetical protein | |||
| 1135 | M | M1.Gva409ORF534P (100% identity) | M1.Gva51ORF1135P | |
| 1134 | 47 aa hypothetical protein | |||
| 1133 | M | M2.Gsp771IP (88% identity) | M2.Gva51ORF1135P | |
| 1132 | R | R1.Gsp1151IIP (98% identity) | R1.Gva51ORF1135P | |
| 1131 | R | Gsp127IIIP (100% identity) | R2.Gva51ORF1135P | |
| 1130 | 261 aa hypothetical protein | |||
| 1097 | 261 aa hypothetical protein | |||
| 1098 | M | M.Gsp1204ORF4645P (96% identity) | M.Gva51ORF1098P | |
| 1099 | 226 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | GvaAMDORF1087P (12% identity) | Gva51ORFAP | |