Escherichia coli XH001 |
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Putative Escherichia coli XH001 RM systems
Ref: Yang,H.L. et al. unpublished
REBASE ref # 13628
GenBank #: AFYG00000000
REBASE acronym: EcoXH
Org_num: 7860
All begin IAM_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 13619 | methylated adenine and cytosine restriction | |||
| ??? | R | Msa17ORFC2P (100% identity) | AACNNNNNNGTGC | EcoXHORF13629P |
| 13629 | M | M.Eco98082ORF22055P (100% identity) | AACNNNNNNGTGC | M.EcoXHORF13629P |
| 13634 | S | S.Eco98082ORF22055P (100% identity) | AACNNNNNNGTGC | S.EcoXHORF13629P |
| 13639 | endoribonuclease SymE | |||
| 21679 | antitoxin of P1 addiction system | |||
| 21684 | M | M.Eco1613ORF18710P (98% identity) | M.EcoXHORF21684AP | |
| 21689 | transposase InsC for insertion sequence IS903 | |||
| 21694 | M | HsdM | M.EcoXHORF21684BP | |
| 21699 | S | S.SspS13ORF175P (100% identity) | S.EcoXHORF21684P | |
| 21704 | R | EcoE166ORF25560P (100% identity) | EcoXHORF21684P | |
| 21709 | morphogenetic protein | |||
| 22743 | M | M.Kpn1401ORF4490P (93% identity) | M.EcoXHORF22743P | |
| 22748 | S | S.Kpn1401ORF4490P (100% identity) | S.EcoXHORF22743P | |
| 22753 | 472 aa hypothetical protein | |||
| 22758 | 676 aa hypothetical protein | |||
| 22763 | R | type I site-specific deoxyribonuclease, HsdR | EcoXHORF22743P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1895 | DMT superfamily transporter inner | |||
| 1900 | V | V.SflFF64DcmP (100% identity) | V.EcoXHDcmP | |
| 1905 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoXHDcmP |
| 1910 | hydrolase | |||
| 11968 | cell division protein DamX | |||
| 11973 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoXHDamP |
| 11978 | ribulose-phosphate 3-epimerase | |||
| 17604 | 59 aa hypothetical protein | |||
| 17609 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoXHORF17609P |
| 17614 | global DNA-binding transcriptional dual | |||
| 20381 | conserved predicted protein | |||
| 20386 | M | M.Ype21801ORF197P (100% identity) | M1.EcoXHORF20386P | |
| 20391 | DNA-binding protein | |||
| 20526 | 101 aa hypothetical protein | |||
| 20531 | M | M.Sen63ORFJP (97% identity) | M.EcoXHORF20531P | |
| 20536 | recombination associated protein | |||
| 22928 | 55 aa hypothetical protein | |||
| 22933 | M | M.StypAKU1ORFCP (100% identity) | CCWGG | M.EcoXHORF22933P |
| 22938 | partition protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7968 | isocitrate dehydrogenase | |||
| 7973 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoXHMcrAP |
| 7978 | e14 prophage; site-specific DNA recombinase | |||
| 13639 | endoribonuclease SymE | |||
| 13644 | R | SenHNK130McrBP (100% identity) | EcoXHMcrBP | |
| 13649 | R | Eco98082McrCP (100% identity) | EcoXHMcrCP | |
| 13654 | DEAD-box helicase-like protein | |||
| 13614 | GTP-binding protein YjiA | |||
| 13619 | R | SenHNK130MrrP (100% identity) | EcoXHMrrP | |
| ??? | endonuclease R Type I restriction enzyme | |||