Helicobacter pylori Santal49 |
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Putative Helicobacter pylori Santal49 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 13398
Complete sequence: 1,607,577 bp
GenBank #: CP002983
REBASE acronym: Hpy49
Org_num: 7710
All begin HPSNT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2355 | 36 aa hypothetical protein | |||
| 2360 | S | S.HpyKG4ORF2155P (98% identity) | S.Hpy49ORF2365P | |
| 2365 | M | M.HpyGE12ORF4845P (95% identity) | M.Hpy49ORF2365P | |
| 2370 | R | HpyKH34ORFLP (71% identity) | Hpy49ORF2365P | |
| 2375 | 631 aa hypothetical protein | |||
| 4075 | 44 aa hypothetical protein | |||
| 4080 | S | S.HpyGE2ORF3165P (97% identity) | S.Hpy49ORF4080P | |
| 4085 | Cadmium, zinc and cobalt-transporting ATPase | |||
| 4380 | hydroxyethylthiazole kinase | |||
| 4385 | R | HpyKH39ORFVP (95% identity) | Hpy49ORF4395P | |
| 4390 | S | S.Hpy49ORF4080P (49% identity) | S.Hpy49ORF4395P | |
| 4395 | M | M.HpyAR10ORF2470P (89% identity) | M.Hpy49ORF4395P | |
| 4400 | site-specific DNA methyltransferase | |||
| 7055 | 30 aa hypothetical protein | |||
| ??? | S | S.HpyM5CORFBP (87% identity) | S.Hpy49ORF7060P | |
| 7070 | formyltetrahydrofolate deformylase | |||
| 7595 | 30 aa hypothetical protein | |||
| 7600 | S | type I R-M system specificity subunit | S1.Hpy49ORFAP | |
| 7605 | S | S.HpyMM08ORF7135P (74% identity) | S2.Hpy49ORFAP | |
| ??? | M | M.HpyBS21ORF7675P (49% identity) | M.Hpy49ORFAP | |
| 7620 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 225 | 330 aa hypothetical protein | |||
| ??? | M | M.HpyN6ORFPP (61% identity) | CCTC | M.Hpy49ORF230P |
| 240 | sodium/proline symporter | |||
| 630 | HrgA protein | |||
| 635 | M | M.HpyMA17II (97% identity) | GATC | M.Hpy49ORF635P |
| 650 | 176 aa hypothetical protein | |||
| 1485 | exodeoxyribonuclease VII large subunit | |||
| 1490 | M | M.HpyMM01ORF1255P (84% identity) | TCGA | M.Hpy49ORF1490P |
| 1495 | Endonuclease MjaVIP | |||
| 1490 | type III adenine methyltransferase | |||
| 1495 | R | HpyP104IVP (96% identity) | CCGG | Hpy49ORF1500P |
| 1500 | M | M.HpyGE4IV (99% identity) | CCGG | M.Hpy49ORF1500P |
| 1505 | ATP-dependent protease binding subunit / | |||
| 1735 | 293 aa hypothetical protein | |||
| 1740 | R | HpySW12VIIP (90% identity) | CTNAG | Hpy49ORF1745P |
| 1745 | M | M.HpyMM11VII (100% identity) | CTNAG | M.Hpy49ORF1745P |
| 1750 | 121 aa hypothetical protein | |||
| 2450 | outer membrane protein HopK | |||
| 2455 | M | M.HpyKH15ORFIP (97% identity) | ATTAAT | M.Hpy49ORF2455P |
| 2460 | type II adenine specific methyltransferase | |||
| 2465 | GTP-binding protein TypA | |||
| 2470 | M | M.HpyTW17V (98% identity) | ACNGT | M.Hpy49ORF2470P |
| 2475 | R | Hpyfe39ORF4885P (100% identity) | ACNGT | Hpy49ORF2470P |
| 2480 | DNA (cytosine-5-)-methyltransferase | |||
| 2475 | type II restriction endonuclease | |||
| 2480 | M | M.HpyMM11ORF2320P (97% identity) | ACGT | M.Hpy49ORF2480P |
| ??? | R | HpyID3ORF2295P (80% identity) | ACGT | Hpy49ORF2480P |
| 2490 | 30 aa hypothetical protein | |||
| 2580 | DNA gyrase subunit B | |||
| 2585 | M | M.HpyKH32ORFHP (93% identity) | GTAC | M.Hpy49ORF2585P |
| ??? | R | HpyGCT27ORF1545P (90% identity) | GTAC | Hpy49ORF2585P |
| 2600 | outer membrane protein | |||
| 3430 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyC008ORF3295P (81% identity) | Hpy49ORF3440P | |
| 3450 | 408 aa hypothetical protein | |||
| 4220 | osmoprotection protein | |||
| 4225 | R | HpyBT112ORF4530P (99% identity) | CGWCG | Hpy49ORF4230P |
| 4230 | M | M.HpyBT112ORF4530P (100% identity) | CGWCG | M.Hpy49ORF4230P |
| 4235 | 33 aa hypothetical protein | |||
| 4395 | type I restriction enzyme M protein | |||
| 4400 | M | M.HpyNP07ORF2450P (100% identity) | GGCC | M.Hpy49ORF4400P |
| 4405 | R | HpyMM02ORF2280P (98% identity) | GGCC | Hpy49ORF4400P |
| 4410 | 228 aa hypothetical protein | |||
| 4720 | flagellar hook protein FlgE | |||
| 4725 | R | HpyIS2XIIIP (98% identity) | GTNNAC | Hpy49ORF4730P |
| 4730 | M | M.HpyMM01XIII (96% identity) | GTNNAC | M.Hpy49ORF4730P |
| 4735 | rep helicase, single-stranded DNA-dependent | |||
| 5370 | biotin carboxylase | |||
| 5385 | M | M.HpyBT302ORFSP (99% identity) | TCNNGA | M.Hpy49ORF5385P |
| 5390 | R | HpyMM08XIIP (99% identity) | TCNNGA | Hpy49ORF5385P |
| 5395 | 199 aa hypothetical protein | |||
| 5570 | 144 aa hypothetical protein | |||
| 5575 | M | M.HpyIN2XI (96% identity) | GCGC | M.Hpy49ORF5575P |
| 5580 | 67 aa hypothetical protein | |||
| 6040 | 222 aa hypothetical protein | |||
| 6045 | M | M.HpyMM11I (97% identity) | CATG | M.Hpy49ORF6045P |
| 6050 | 48 aa hypothetical protein | |||
| 6770 | carboxyl-terminal protease | |||
| ??? | RM | HpyIN7ORF6600P (89% identity) | Hpy49ORF6775P | |
| 6785 | nicotinate-nucleotide pyrophosphorylase | |||
| 7275 | DNA polymerase I | |||
| ??? | S | S.HpyKH14ORFQP (95% identity) | S.Hpy49ORF7290P | |
| 7290 | RM | HpySP310ORF6805P (98% identity) | Hpy49ORF7290P | |
| 7295 | 191 aa hypothetical protein | |||
| 7425 | 355 aa hypothetical protein | |||
| 7430 | M | M1.HpyNP12III (99% identity) | CCATC | M1.Hpy49ORF7430P |
| 7435 | M | M2.HpyU422IV (93% identity) | GATGG | M2.Hpy49ORF7430P |
| 7440 | R | HpyMM05IVP (99% identity) | CCATC | Hpy49ORF7430P |
| 7445 | outer membrane protein (omp32) | |||
| 7520 | 177 aa hypothetical protein | |||
| 7525 | RM | HpyBG2ORF6800P (92% identity) | Hpy49ORF7525P | |
| 7530 | type III R-M system restriction enzyme | |||
| 7705 | 67 aa hypothetical protein | |||
| 7710 | M | M.HpyI013VI (98% identity) | TGCA | M.Hpy49ORF7710P |
| 7715 | R | HpyBG2XP (98% identity) | TGCA | Hpy49ORF7710P |
| 7720 | ubiquinol cytochrome c oxidoreductase, | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3040 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||
| 3045 | R | HpyMM05XIIP (96% identity) | CTGCAG | Hpy49ORF3050P |
| 3050 | M | M.HpyC001ORF2235P (97% identity) | M.Hpy49ORF3050P | |
| 3055 | 54 aa hypothetical protein | |||
| 6835 | response regulator | |||
| 6840 | M | M.HpyMM04XVII (96% identity) | M.Hpy49ORF6840P | |
| 6845 | R | HpyMTT60ORFHP (90% identity) | Hpy49ORF6840P | |
| 6850 | rod shape-determining protein MreC | |||
| 6905 | endonuclease | |||
| 6910 | M | M.HpyBG2ORF6545P (95% identity) | M.Hpy49ORF6910P | |
| 6915 | R | HpySW14ORF6600P (84% identity) | Hpy49ORF6910P | |
| 6920 | biotin synthase | |||
| 7525 | type IIS restriction-modification protein | |||
| 7530 | R | HpySW15ORF7275P (91% identity) | Hpy49ORF7535P | |
| ??? | M | M.HpyPE124ORF7095P (94% identity) | M.Hpy49ORF7535P | |
| 7545 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2630 | glutamine synthetase | |||
| ??? | R | HpyH017GmrSDP (40% identity) | Hpy49GmrSDAP | |
| ??? | R | HpyBG9GmrSDP (40% identity) | Hpy49GmrSDBP | |
| 2645 | 50S ribosomal protein L9 | |||