Helicobacter pylori Puno135 |
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Putative Helicobacter pylori Puno135 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 13395
Complete sequence: 1,646,139 bp
GenBank #: CP002982
REBASE acronym: Hpy135
Org_num: 7709
All begin HPPN135_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2245 | 33 aa hypothetical protein | |||
| 2250 | S | S.HpyCOL104ORF2035P (98% identity) | S.Hpy135ORF2255P | |
| 2255 | M | M.HpySORF2270P (97% identity) | M.Hpy135ORF2255P | |
| ??? | R | HpyPU008ORF2150P (93% identity) | Hpy135ORF2255P | |
| 2275 | 631 aa hypothetical protein | |||
| 4165 | N-acetylneuraminic acid synthetase | |||
| 4170 | R | HpyPU001ORF2955P (83% identity) | Hpy135ORF4200P | |
| 4175 | 62 aa hypothetical protein | |||
| 7235 | 30 aa hypothetical protein | |||
| 7240 | S | S.Hpy3192ORF7690P (94% identity) | S.Hpy135ORF7240P | |
| 7245 | formyltetrahydrofolate deformylase | |||
| 7730 | FAD-dependent thymidylate synthase | |||
| 7735 | S | S.HpyPU008ORF7520P (97% identity) | S.Hpy135ORF7745P | |
| 7740 | 255 aa hypothetical protein | |||
| 7745 | M | M.HpyPU008ORF7520P (98% identity) | M.Hpy135ORF7745P | |
| 7750 | R | HpySP706ORF7135P (94% identity) | Hpy135ORF7745P | |
| 7755 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 235 | 330 aa hypothetical protein | |||
| 240 | M | M1.HpySG32IV (99% identity) | CCTC | M1.Hpy135ORF240P |
| 245 | M | M2.HpyPU008VIP (99% identity) | CCTC | M2.Hpy135ORF240P |
| 250 | R | HpyPU004VIP (95% identity) | CCTC | Hpy135ORF240P |
| 255 | type II DNA modification enzyme | |||
| 250 | 408 aa hypothetical protein | |||
| 255 | M | M.Hpy192ORFCP (98% identity) | GTSAC | M.Hpy135ORF255P |
| 260 | R | type II restriction enzyme | GTSAC | Hpy135ORF255P |
| 265 | type II DNA modification enzyme | |||
| 455 | malonyl CoA-acyl carrier protein transacylase | |||
| 465 | R | HpySP706IXP (98% identity) | GATC | Hpy135ORF470P |
| 470 | M | M.HpyPU002VII (98% identity) | GATC | M.Hpy135ORF470P |
| 485 | 176 aa hypothetical protein | |||
| 1340 | exodeoxyribonuclease VII large subunit | |||
| 1345 | M | M.HpyUM023ORF3260P (96% identity) | TCGA | M.Hpy135ORF1345P |
| 1350 | 204 aa hypothetical protein | |||
| 1350 | 204 aa hypothetical protein | |||
| 1355 | R | HpyC002IIP (97% identity) | CCGG | Hpy135ORF1360P |
| 1360 | M | M.HpyP96ORFAP (99% identity) | CCGG | M.Hpy135ORF1360P |
| 1365 | ATP-dependent protease binding subunit (clpB) | |||
| 1595 | 293 aa hypothetical protein | |||
| 1600 | R | Hpy120ORF1585P (98% identity) | CTNAG | Hpy135ORF1605P |
| 1605 | M | M.Hpyfe124ORF5400P (99% identity) | CTNAG | M.Hpy135ORF1605P |
| 1610 | 125 aa hypothetical protein | |||
| 1805 | GTP-binding protein LepA | |||
| 1810 | M | M.HpySW02XV (100% identity) | GCNGC | M.Hpy135ORF1810P |
| 1815 | 156 aa hypothetical protein | |||
| 2335 | outer membrane protein (omp22) | |||
| 2340 | M | M.HpyPE111II (98% identity) | ATTAAT | M.Hpy135ORF2340P |
| 2345 | type II adenine specific methyltransferase | |||
| 2350 | GTP-binding protein TypA | |||
| 2355 | M | M.HpyPU007II (99% identity) | ACNGT | M.Hpy135ORF2355P |
| 2360 | R | HpyBG9IIP (94% identity) | ACNGT | Hpy135ORF2355P |
| 2365 | type II DNA modification methyltransferase | |||
| 2360 | type II restriction endonuclease | |||
| 2365 | M | M.HpyPO105ORF3735P (98% identity) | ACGT | M.Hpy135ORF2365P |
| 2370 | R | HpyT006ORF2245P (98% identity) | ACGT | Hpy135ORF2365P |
| 2375 | catalase-like protein | |||
| 3290 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 3295 | RM | 505 aa hypothetical protein | Hpy135ORF3295P | |
| 3300 | 1117 aa hypothetical protein | |||
| 3295 | 505 aa hypothetical protein | |||
| 3300 | RM | HpySH011ORF3450P (63% identity) | Hpy135ORF3300P | |
| 3305 | outer membrane protein HorF | |||
| 3380 | 270 aa hypothetical protein | |||
| 3385 | M | M.HpyTW24IV (99% identity) | CCNNGG | M.Hpy135ORF3385P |
| 3390 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | Hpy135ORF3385P |
| 3395 | 133 aa hypothetical protein | |||
| 3880 | outer membrane protein HofF | |||
| 3885 | R | HpyPE11ORF2725P (100% identity) | GCSGC | Hpy135ORF3890P |
| 3890 | M | M.HpyPE11ORF2725P (100% identity) | GCSGC | M.Hpy135ORF3890P |
| 3895 | cadmium, zinc and cobalt-transporting ATPase | |||
| 4200 | type I restriction enzyme M protein | |||
| 4205 | M | M.HpysHP34ORF6260P (100% identity) | GGCC | M.Hpy135ORF4205P |
| 4210 | R | HpySORF2550P (100% identity) | GGCC | Hpy135ORF4205P |
| 4215 | 225 aa hypothetical protein | |||
| 4485 | flagellar hook protein FlgE | |||
| 4490 | R | HpyU003XIP (98% identity) | GTNNAC | Hpy135ORF4495P |
| 4495 | M | M.HpyCOL305VII (99% identity) | GTNNAC | M.Hpy135ORF4495P |
| 4500 | rep helicase, single-stranded DNA-dependent | |||
| 5540 | biotin carboxylase | |||
| 5545 | M | M.HpyU203XII (100% identity) | TCNNGA | M.Hpy135ORF5545P |
| 5550 | R | HpySG04XIIP (98% identity) | TCNNGA | Hpy135ORF5545P |
| 5555 | 199 aa hypothetical protein | |||
| 5725 | 144 aa hypothetical protein | |||
| 5730 | M | M.Hpy1768ORFVP (97% identity) | GCGC | M.Hpy135ORF5730P |
| 5735 | flgM protein | |||
| 6195 | 222 aa hypothetical protein | |||
| 6200 | M | M.HpySH014I (98% identity) | CATG | M.Hpy135ORF6200P |
| 6205 | R | Hpyfe8ORF5510P (95% identity) | CATG | Hpy135ORF6200P |
| 6210 | serine acetyltransferase | |||
| 6915 | adenine specific DNA methyltransferase | |||
| 6920 | R | HpyG003VIIIP (88% identity) | GANTC | Hpy135ORF6915P |
| 6925 | M | M.HpySORF7000P (99% identity) | GANTC | M.Hpy135ORF6915P |
| 6930 | nicotinate-nucleotide pyrophosphorylase | |||
| 6980 | transcriptional regulator | |||
| 6985 | R | HpyCA1IVP (99% identity) | GAAGA | Hpy135ORF6990P |
| 6990 | M | M1.HpyLIM7V (99% identity) | GAAGA | M1.Hpy135ORF6990P |
| 6995 | M | M2.Hpyfe23ORF7115P (99% identity) | GAAGA | M2.Hpy135ORF6990P |
| 7000 | Adenine-specific DNA methylase | |||
| ??? | hypothetical protein | |||
| 7010 | R | HpySH011ORF6595P (99% identity) | GATATC | Hpy135ORF7015P |
| 7015 | M | M.HpyCOL210ORF6675P (100% identity) | M.Hpy135ORF7015P | |
| 7020 | Adenine-specific DNA methylase | |||
| 7150 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7155 | M | M.HpyAL2VII (99% identity) | GAATTC | M.Hpy135ORF7155P |
| 7160 | R | HpySP318VIIIP (100% identity) | GAATTC | Hpy135ORF7155P |
| 7165 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7435 | DNA polymerase I | |||
| 7440 | S | S.HpyBS07ORF4765P (46% identity) | S.Hpy135ORF7445P | |
| ??? | RM | Hpy417ORF7170P (96% identity) | Hpy135ORF7445P | |
| 7455 | 191 aa hypothetical protein | |||
| 7660 | transcription elongation factor NusA | |||
| 7665 | RM | HpyC028ORF7625P (68% identity) | Hpy135ORF7665P | |
| ??? | type III restriction enzyme | |||
| 7835 | 67 aa hypothetical protein | |||
| 7840 | M | M.Hpy1768ORFWP (99% identity) | TGCA | M.Hpy135ORF7840P |
| 7845 | R | HpyPU001XP (99% identity) | TGCA | Hpy135ORF7840P |
| 7850 | 48 aa hypothetical protein | |||
| 7850 | 48 aa hypothetical protein | |||
| 7855 | M | M.Hpy120ORF7775P (99% identity) | M.Hpy135ORF7855P | |
| 7860 | 366 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6995 | type IIS restriction enzyme M2 protein (mod) | |||
| ??? | M | M.HpyCA10ORF4605P (96% identity) | M1.Hpy135ORF7000P | |
| 7010 | type II restriction endonuclease | |||
| 7015 | DNA adenine methylase | |||
| ??? | M | M.HpyJ026ORF200P (93% identity) | M.Hpy135ORF7020P | |
| 7030 | R | HpySH014ORF6595P (97% identity) | Hpy135ORF7020P | |
| 7035 | rod shape-determining protein MreC | |||
| 7085 | endonuclease G | |||
| 7090 | M | M.Hpy228ORF6315P (95% identity) | M.Hpy135ORF7090P | |
| 7095 | R | HpyG006ORF325P (86% identity) | Hpy135ORF7090P | |
| 7100 | biotin synthase | |||
| 7665 | type IIS restriction-modification protein | |||
| ??? | R | HpyPU002ORF7075P (96% identity) | Hpy135ORF7680P | |
| 7680 | M | M.Hpy5019ORF2935P (28% identity) | M.Hpy135ORF7680P | |
| 7685 | ATP-dependent DNA helicase RecG | |||