Helicobacter pylori Puno120 |
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Putative Helicobacter pylori Puno120 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 13395
Complete sequence: 1,624,979 bp
GenBank #: CP002980
REBASE acronym: Hpy120
Org_num: 7708
All begin HPPN120_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2225 | 36 aa hypothetical protein | |||
| ??? | S | S.Hpy20ORF2535P (99% identity) | S.Hpy120ORF2240P | |
| 2240 | M | M.HpyPE19ORF2175P (98% identity) | M.Hpy120ORF2240P | |
| 2245 | R | HpyPU008ORF2150P (96% identity) | Hpy120ORF2240P | |
| 2250 | 631 aa hypothetical protein | |||
| 3895 | outer membrane protein HofF | |||
| 3900 | S | S.HpyPU004XV (68% identity) | S.Hpy120ORF3900P | |
| 3905 | cadmium-transporting ATPase | |||
| 4185 | N-acetylneuraminic acid synthetase | |||
| 4190 | R | HpyPU002ORF4030P (97% identity) | Hpy120ORF4190P | |
| 4195 | thiamine-phosphate pyrophosphorylase | |||
| 6980 | cagY like protein | |||
| 6985 | S | S.HpyCA1ORF7415P (96% identity) | S.Hpy120ORF6985P | |
| 6990 | formyltetrahydrofolate deformylase | |||
| 7530 | 30 aa hypothetical protein | |||
| 7535 | S | S.HpyISR5ORF6845P (87% identity) | S.Hpy120ORFAP | |
| 7540 | 255 aa hypothetical protein | |||
| ??? | M | M.Hpyfe97ORF7790P (96% identity) | M.Hpy120ORFAP | |
| 7555 | R | HpyPE11XVP (34% identity) | Hpy120ORFAP | |
| 7560 | 266 aa hypothetical protein | |||
| 7655 | 256 aa hypothetical protein | |||
| 7670 | R | HpySP706ORF7135P (62% identity) | Hpy120ORF7670P | |
| 7675 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 225 | 330 aa hypothetical protein | |||
| 230 | M | M1.HpyPE138IV (98% identity) | CCTC | M1.Hpy120ORF230P |
| 235 | M | M2.HpyPU001IVP (98% identity) | CCTC | M2.Hpy120ORF230P |
| ??? | R | Hpy828ORF305P (93% identity) | CCTC | Hpy120ORF230P |
| 250 | adenine/cytosine DNA methyltransferase | |||
| 465 | HrgA protein | |||
| 470 | M | M.HpyAL05ORFRP (99% identity) | GATC | M.Hpy120ORF470P |
| 485 | 176 aa hypothetical protein | |||
| 1320 | exodeoxyribonuclease VII large subunit | |||
| 1325 | R | HpyCHN8IVP (95% identity) | CCGG | Hpy120ORF1330P |
| 1330 | M | M.HpyP96ORFAP (98% identity) | CCGG | M.Hpy120ORF1330P |
| 1335 | ATP-dependent protease binding subunit (clpB) | |||
| 1575 | 293 aa hypothetical protein | |||
| 1580 | R | HpyPU007VIIP (98% identity) | CTNAG | Hpy120ORF1585P |
| 1585 | M | M.Hpyfe124ORF5400P (100% identity) | CTNAG | M.Hpy120ORF1585P |
| 1590 | 119 aa hypothetical protein | |||
| 2320 | GTP-binding protein TypA | |||
| 2325 | M | M.HpyPU002II (99% identity) | ACNGT | M.Hpy120ORF2325P |
| 2330 | R | HpyC011VP (97% identity) | ACNGT | Hpy120ORF2325P |
| 2335 | type II DNA modification enzyme | |||
| 2330 | type II restriction endonuclease | |||
| 2335 | M | M.HpyTW19ORF2390P (99% identity) | ACGT | M.Hpy120ORF2335P |
| 2340 | R | HpyPE138ORF2260P (98% identity) | ACGT | Hpy120ORF2335P |
| 2345 | catalase-like protein | |||
| 3360 | 449 aa hypothetical protein | |||
| ??? | RM | HpyPU001ORF3795P (87% identity) | Hpy120ORF3365P | |
| 3375 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 4480 | flagellar hook protein FlgE | |||
| 4485 | M | M.HpyC116VIII (99% identity) | GTNNAC | M.Hpy120ORF4485P |
| 4490 | rep helicase, single-stranded DNA-dependent | |||
| 5250 | biotin carboxylase | |||
| 5255 | M | M.HpyPU004XII (99% identity) | TCNNGA | M.Hpy120ORF5255P |
| 5260 | R | HpyC007IXP (89% identity) | TCNNGA | Hpy120ORF5255P |
| 5265 | 199 aa hypothetical protein | |||
| 5445 | 144 aa hypothetical protein | |||
| 5450 | M | M.Hpy117ORF5270P (98% identity) | GCGC | M.Hpy120ORF5450P |
| 5455 | flgM protein | |||
| 5910 | 222 aa hypothetical protein | |||
| 5915 | M | M.HpyHK711ORFUP (97% identity) | CATG | M.Hpy120ORF5915P |
| 5920 | 51 aa hypothetical protein | |||
| 6645 | adenine specific DNA methyltransferase | |||
| 6650 | R | HpyPE11IVP (96% identity) | GANTC | Hpy120ORF6645P |
| 6655 | M | M.HpySG06VI (99% identity) | GANTC | M.Hpy120ORF6645P |
| 6660 | adenine specific DNA methyltransferase | |||
| 6655 | adenine specific DNA methyltransferase (HINFIM) | |||
| 6660 | RM | HpyF18KORF46P (83% identity) | Hpy120ORF6660P | |
| 6665 | nicotinate-nucleotide pyrophosphorylase | |||
| 6715 | response regulator | |||
| 6720 | R | Hpy135ORF6990P (76% identity) | GAAGA | Hpy120ORF6725P |
| 6725 | M | M1.Hpyfe78ORF7125P (86% identity) | GAAGA | M1.Hpy120ORF6725P |
| 6730 | M | modification methylase mjai | GAAGA | M2.Hpy120ORF6725P |
| 6735 | type II restriction endonuclease | |||
| 6730 | modification methylase mjai | |||
| 6735 | R | HpySH011ORF6595P (100% identity) | GATATC | Hpy120ORF6740P |
| 6740 | M | M.HpyCOL210ORF6675P (99% identity) | GATATC | M.Hpy120ORF6740P |
| 6745 | Adenine-specific DNA methylase | |||
| 7190 | DNA polymerase I | |||
| 7195 | S | S2.Hpy24AORFZP (94% identity) | S.Hpy120ORF7200P | |
| ??? | RM | Hpy5056ORF4650P (92% identity) | Hpy120ORF7200P | |
| 7210 | competence protein ComFC | |||
| 7340 | 355 aa hypothetical protein | |||
| 7345 | M | M1.HpyPE138III (100% identity) | CCATC | M1.Hpy120ORF7345P |
| 7350 | M | M2.HpyPU007IV (99% identity) | GATGG | M2.Hpy120ORF7345P |
| 7355 | R | HpyPU004IVP (96% identity) | CCATC | Hpy120ORF7345P |
| 7360 | outer membrane protein HopK | |||
| 7455 | 174 aa hypothetical protein | |||
| 7460 | RM | HpyPE101XVI (90% identity) | Hpy120ORF7460P | |
| 7465 | type III restriction enzyme | |||
| 7760 | 67 aa hypothetical protein | |||
| 7765 | M | M.HpyU201XIII (98% identity) | TGCA | M.Hpy120ORF7765P |
| 7770 | R | HpyPE121XIP (99% identity) | TGCA | Hpy120ORF7765P |
| 7775 | site-specific DNA-methyltransferase | |||
| 7770 | 243 aa hypothetical protein | |||
| 7775 | M | M.HpyPU002ORF7265P (99% identity) | M.Hpy120ORF7775P | |
| 7780 | 338 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6740 | DNA adenine methylase | |||
| ??? | M | M.HpyCA15ORF4595P (97% identity) | M.Hpy120ORF6745P | |
| 6755 | R | Hpybs3ORFMP (91% identity) | Hpy120ORF6745P | |
| 6760 | rod shape-determining protein MreC | |||
| 6810 | DNA/RNA endonuclease G (nucG) | |||
| 6815 | M | M.HpyPU004ORF6590P (97% identity) | M.Hpy120ORF6815P | |
| 6820 | R | HpyPU004ORF6590P (90% identity) | Hpy120ORF6815P | |
| 6825 | biotin synthase | |||
| 7460 | type II S restriction-modification protein | |||
| 7465 | R | HpyPE130ORF7355P (94% identity) | Hpy120ORF7470P | |
| 7470 | M | M.HpyC116ORF295P (27% identity) | M.Hpy120ORF7470P | |
| 7475 | ATP-dependent DNA helicase RecG | |||