Uncultured termite bacterium Rs-D17 |
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Putative Uncultured termite bacterium Rs-D17 RM systems
Ref: Hongoh,Y. et al. Proc. Natl. Acad. Sci. U.S.A. 105 (14), 5555-5560 (2008)
REBASE ref # 10535
Complete sequence: 1,125,857 bp
GenBank #: AP009510 (NS_000191)
REBASE acronym: UtbRs
Org_num: 5065
All begin TGRD_, TGRD_pseudo_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 37 | M | M.EtrD17ORF35P (95% identity) | M.UtbRsORF37P | |
| 38 | S | S.PbaMal65ORF52490P (33% identity) | S.UtbRsORF37P | |
| 39 | R | EtrD17ORF35P (96% identity) | UtbRsORF37P | |
| 40 | 350 aa conserved hypothetical protein | |||
| 193 | 3-dehydroquinate synthetase | |||
| ??? | M | M.EtrD17ORF171P (98% identity) | M.UtbRsORF195P | |
| 194 | 215 aa conserved hypothetical protein | |||
| 195 | S | S.EtrD17ORF171P (65% identity) | S.UtbRsORF195P | |
| ??? | R | EtrD17ORF171P (98% identity) | UtbRsORF195P | |
| 196 | 7, | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 40 | 350 aa conserved hypothetical protein | |||
| ??? | R | Esp005ORFQP (65% identity) | GGNCC | UtbRsORF41P |
| 41 | M | M.EtrORFBP (90% identity) | GGNCC | M.UtbRsORF41P |
| 42 | alanyl-tRNA synthetase | |||
| 274 | 225 aa hypothetical protein | |||
| ??? | M | M.EtrD17ORF249P (67% identity) | M.UtbRsORFAP | |
| ??? | R | 655 aa hypothetical protein | UtbRsORFAP | |
| 275 | DNA polymerase III subunit gamma/tau | |||
| 289 | fumarate hydratase beta subunit | |||
| ??? | M | 96 aa hypothetical protein UV18_C0002G0121 | CCATC | M.UtbRsORFBP |
| ??? | AlwI restriction endonuclease | |||
| 350 | methionyl-tRNA synthetase | |||
| ??? | RM | DNA methyltransferase | UtbRsORFCP | |
| 351 | TatD-related deoxyribonuclease | |||
| 389 | ABC transporter ATPase component-like protein | |||
| ??? | M | M.EtrD17ORF87P (97% identity) | CCNNGG | M.UtbRsORFDP |
| ??? | R | restriction endonuclease | CCNNGG | UtbRsORFDP |
| 390 | dCTP deaminase | |||
| 400 | 147 aa hypothetical protein | |||
| ??? | M | D12 class N6 adenine-specific DNA methyltransferase | M.UtbRsORFEP | |
| 401 | UDP-N-acetylglucosamine | |||
| 413 | glycine cleavage system L protein | |||
| 414 | M | M.EtrD17ORF85P (97% identity) | GGTGA | M.UtbRsORFFP |
| ??? | R | EtrD17ORF85P (90% identity) | UtbRsORFFP | |
| 415 | glycine cleavage system T protein | |||
| 445 | DUF1805-domain protein | |||
| 102 | M | M1.NniMB1I (34% identity) | M1.UtbRsORF102P | |
| 103 | M | M.FspGS13ORF9725P (58% identity) | M2.UtbRsORF102P | |
| 446 | carboxynorspermidine decarboxylase | |||
| 493 | N-(5-phosphoribosyl) anthranilate isomerase | |||
| ??? | M | M.EtrORFNP (38% identity) | AAGCTT | M.UtbRsORFNP |
| ??? | SAM-dependent methyltransferase | |||
| 493 | N-(5-phosphoribosyl) anthranilate isomerase | |||
| ??? | M | M.EtrD17ORF71P (98% identity) | CGCG | M.UtbRsORFOP |
| 494 | phosphoribosyl-AMP cyclohydrolase | |||
| 504 | 4-diphosphocytidyl-2-C-methyl-D-erythritol | |||
| 124 | M | M1.Sba5PBORF2035P (57% identity) | M1.UtbRsORF124P | |
| ??? | M | M2.UbaMDORFU5P (64% identity) | M2.UtbRsORF124P | |
| 125 | R | Ccu8469ORF400P (29% identity) | UtbRsORF124P | |
| 506 | DNA repair protein RecN | |||
| 563 | acetylornithine transaminase | |||
| ??? | R | EtrD17ORF99P (90% identity) | GANTC | UtbRsORFLP |
| ??? | M | 375 aa hypothetical protein ATZ36_13505, partial | GANTC | M.UtbRsORFLP |
| 564 | acetylglutamate kinase | |||
| 565 | 248 aa conserved hypothetical protein | |||
| 566 | M | M.EtrD17ORF532P (100% identity) | M.UtbRsORF566P | |
| 567 | 138 aa conserved hypothetical protein | |||
| 663 | 3-phosphoshikimate 1-carboxyvinyltransferase | |||
| ??? | M | restriction endonuclease subunit M | GGCC | M.UtbRsORFMP |
| ??? | R | EtrD17ORF625P (87% identity) | GGCC | UtbRsORFMP |
| 664 | 3-deoxy-7-phosphoheptulonate synthase | |||
| 717 | glycine cleavage system P protein subunit 1 | |||
| ??? | R | Cba153FORF3855P (32% identity) | CYCGRG | UtbRsORFJP |
| ??? | M | M.BsoBI (31% identity) | CYCGRG | M.UtbRsORFJP |
| 718 | glycine cleavage system P protein subunit 2 | |||
| 730 | sodium-dependent proline transporter | |||
| ??? | M | M.LamSPORF164P (63% identity) | GCGC | M.UtbRsORFKP |
| ??? | V | V.Dde51507ORF807P (36% identity) | V.UtbRsORFKP | |
| 731 | (R)-citramalate synthase | |||
| 743 | dihydroorotate dehydrogenase catalytic subunit | |||
| 744 | R | EtrD17ORF149P (96% identity) | GATC | UtbRsORF745P |
| 745 | M | M.EtrD17ORF149P (98% identity) | GATC | M.UtbRsORF745P |
| 746 | dihydroorotate dehydrogenase electron transfer | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16 | 185 aa conserved hypothetical protein | |||
| ??? | R | EtrD17ORF6P (88% identity) | UtbRsORFGP | |
| ??? | M | M.EtrD17ORF6P (98% identity) | M.UtbRsORFGP | |
| 17 | ribonuclease HII | |||
| 125 | 376 aa hypothetical protein | |||
| 126 | M | M.EtrORFDP (57% identity) | M.UtbRsORF126P | |
| 127 | R | EtrD17ORF25P (97% identity) | UtbRsORF126P | |
| 128 | Fe-S oxidoreductase | |||
| 476 | DNA mismatch repair protein MutL | |||
| ??? | R | EtrD17ORF381P (98% identity) | UtbRsORFHP | |
| ??? | M | M.EtrD17ORF381P (89% identity) | M.UtbRsORFHP | |
| 477 | 807 aa conserved hypothetical protein | |||