Burkholderia vietnamiensis G4 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Burkholderia vietnamiensis G4 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 10054
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,652,814 bp | CP000614 (NC_009256) |
| chromosome 2: | 2,411,759 bp | CP000615 (NC_009255) |
| plasmid pBVIE01: | 397,868 bp | CP000617 (NC_009230) |
| plasmid pBVIE03: | 226,679 bp | CP000619 (NC_009229) |
| plasmid pBVIE04: | 107,231 bp | CP000620 (NC_009228) |
REBASE acronym: BviG4
Org_num: 4733
All begin Bcep1808_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3 | DNA gyrase subunit B | |||
| 4 | R | Psp5005ORF755P (93% identity) | BviG4ORF9P | |
| 5 | 315 aa conserved hypothetical protein | |||
| ??? | S | S.Bba10ORF19420P (26% identity) | S.BviG4ORF9AP | |
| 7 | Integrase, catalytic region | |||
| 8 | IstB domain protein ATP-binding protein | |||
| ??? | S | S.BpsR640ORF4796P (43% identity) | S.BviG4ORF9BP | |
| 9 | M | M.Bps56296ORF7235P (92% identity) | M.BviG4ORF9P | |
| 10 | 92 aa hypothetical protein | |||
| 273 | Resolvase, N-terminal domain protein | |||
| 274 | R | BdiRF2ORF30P (94% identity) | BviG4ORF275P | |
| ??? | M | SAM-dependent methyltransferase | M.BviG4ORF275P | |
| 276 | transposase, mutator type | |||
| 277 | S | S.PbaPan97ORF39890P (47% identity) | S.BviG4ORF275P | |
| 278 | 170 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 173 | protein of unknown function DUF955 | |||
| 174 | M | M.Bmu1185ORF965P (99% identity) | CTGCAG | M.BviG4ORF174P |
| 175 | R | BpsBP169ORF7730P (97% identity) | CTGCAG | BviG4ORF174P |
| 176 | 848 aa hypothetical protein | |||
| 1151 | 487 aa hypothetical protein | |||
| 1152 | M | M.Bla17928ORFAP (81% identity) | YGGCCR | M.BviG4ORF1152P |
| 1153 | RecT protein | |||
| 2013 | PglZ domain protein | |||
| ??? | RM | Ava1005ORF16645P (42% identity) | BviG4ORF2014AP | |
| 2015 | Helix-turn-helix, type 11 domain protein | |||
| 2016 | Integrase, catalytic region | |||
| ??? | RM | 224 aa hypothetical protein AX768_02035 | BviG4ORF2014BP | |
| 2017 | ATPase-like protein | |||
| 2130 | 188 aa hypothetical protein | |||
| 2131 | M | M.SstSB22ORF35280P (45% identity) | CCGCGG | M.BviG4ORF2131P |
| 2132 | 560 aa hypothetical protein | |||
| 2163 | 292 aa hypothetical protein | |||
| 2164 | M | M.JspJ11ORFAP (53% identity) | M.BviG4ORF2164P | |
| 2165 | Ankyrin | |||
| 2667 | 106 aa hypothetical protein | |||
| 2668 | M | M.Bvi721ORF23875P (75% identity) | M.BviG4ORF2668P | |
| 2669 | 541 aa hypothetical protein | |||
| 3251 | 189 aa hypothetical protein | |||
| 3252 | M | M1.Cpa1472ORF8505P (97% identity) | M1.BviG4ORF3252P | |
| 3253 | Peptidase M15A | |||
| 3254 | M | M2.Cpa1472ORF8505P (86% identity) | M2.BviG4ORF3252P | |
| 3255 | transposase IS66 | |||
| chromosome 2 | ||||
| 4462 | tryptophan synthase, beta chain | |||
| 4463 | M | M.Bvi867ORF22530P (100% identity) | M.BviG4ORF4463P | |
| 4464 | tryptophan synthase, alpha chain | |||
| plasmid pBVIE01 | ||||
| 6904 | 114 aa hypothetical protein | |||
| 6905 | M | M.BspYI23ORF1270P (99% identity) | CAGCTG | M.BviG4ORF6905P |
| 6906 | nuclear protein SET | |||
| 6976 | 207 aa hypothetical protein | |||
| 6977 | M | M.BspM701ORFDP (55% identity) | M.BviG4ORF6977P | |
| 6978 | Integrase, catalytic region | |||
| plasmid pBVIE03 | ||||
| 7431 | 184 aa hypothetical protein | |||
| 7432 | M | M.Bsp2280ORF1900P (54% identity) | CTSAG | M.BviG4ORF7432P |
| 7433 | 598 aa hypothetical protein | |||
| plasmid pBVIE04 | ||||
| 7623 | 105 aa hypothetical protein | |||
| ??? | M | DNA methyltransferase | M.BviG4ORF7624P | |
| 7625 | 330 aa conserved hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 36 | 127 aa conserved hypothetical protein | |||
| 37 | R | BspMBR1ORF2105P (99% identity) | BviG4ORF38P | |
| 38 | M | M.Bvi608ORF140P (99% identity) | M.BviG4ORF38P | |
| 39 | outer membrane protein (porin)-like protein | |||