Putative Acidithiobacillus caldus SM-1 RM systems
Ref: You,X.Y. et al. J Genet Genomics 38 (6), 243-252 (2011)
REBASE ref # 13099
Sequence length: | GenBank #: | |
Chromosome: | 2,932,225 bp | CP002573 (NC_015850) |
plasmid megaplasmid: | 251,782 bp | CP002574 (NC_015851) |
plasmid pLAtc3: | 29,704 bp | CP002577 (NC_015854) |
REBASE acronym: AcaSM1
Org_num: 7305
All begin Atc_, Atc_3p, Atc_m
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1132 | 115 aa conserved hypothetical protein | |||
1133 | M | type I restriction-modification | M.AcaSM1ORF1133P | |
1134 | 211 aa conserved hypothetical protein | |||
1135 | S | S.AcaMTH04ORF5325P (67% identity) | S.AcaSM1ORF1133P | |
1136 | 167 aa conserved hypothetical protein | |||
1145 | 150 aa conserved hypothetical protein | |||
1146 | R | AcaMTH04ORF5490P (99% identity) | AcaSM1ORF1146P | |
1147 | 87 aa hypothetical protein | |||
plasmid pLAtc3 | ||||
28 | conserved hypothetical protein | |||
3 | M | M.AcaMTH04ORF5780P (99% identity) | M.AcaSM1ORF3P | |
2 | Conjugative transfer protein TrbL | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
433 | transcriptional regulator, AbrB family | |||
??? | RM | AcaMTH04ORF1725P (100% identity) | AcaSM1ORF434P | |
436 | 142 aa conserved hypothetical protein | |||
1160 | 104 aa hypothetical protein | |||
1161 | RM | AcaMTH04ORF5585P (100% identity) | AcaSM1ORF1161P | |
1162 | 143 aa conserved hypothetical protein | |||
1227 | Thiol:disulfide interchange protein DsbG | |||
1228 | M | M.Aca51756ORF1523P (90% identity) | AAGCTT | M.AcaSM1ORF1228P |
1229 | acyltransferase 3 | |||
1233 | 181 aa conserved hypothetical protein | |||
??? | M | M.Lfe14647ORF1526P (41% identity) | CCCGGG | M.AcaSM1ORF1234P |
1236 | 98 aa hypothetical protein | |||
1247 | 388 aa conserved hypothetical protein | |||
1248 | M | M.Xci7112ORF22525P (78% identity) | CCGCGG | M.AcaSM1ORF1248P |
1249 | 71 aa conserved hypothetical protein | |||
1279 | DNA primase | |||
1280 | M | M.AcaMTH04ORF6165P (100% identity) | TGGCCA | M.AcaSM1ORF1280P |
1281 | 407 aa conserved hypothetical protein | |||
2022 | phage transcriptional regulator | |||
2023 | M | M.AthCLSTORFBP (37% identity) | GATC | M.AcaSM1ORF2023P |
2024 | 21 aa hypothetical protein | |||
2079 | 46 aa conserved hypothetical protein | |||
2080 | M | M.Pfl2018ORF28110P (53% identity) | CTGCAG | M.AcaSM1ORF2080P |
??? | R | BsuBIPstI restriction endonuclease domain-containing protein | CTGCAG | AcaSM1ORF2080AP |
2081 | Transposase | |||
2082 | Transposase | |||
2083 | R | MmiET2ORF2053P (28% identity) | CTGCAG | AcaSM1ORF2080BP |
2084 | helix-turn-helix domain-containing protein | |||
plasmid megaplasmid | ||||
167 | 137 aa conserved hypothetical protein | |||
168 | RM | AcaMTH04ORF2436P (100% identity) | AcaSM1ORF168P | |
169 | DNA ligase III-like protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1189 | 86 aa hypothetical protein | |||
1190 | R | Ppa10489ORF18030P (85% identity) | AcaSM1ORF1191P | |
1191 | M | M.GbeNIH71ORF8337P (86% identity) | M.AcaSM1ORF1191P | |
1192 | 570 aa conserved hypothetical protein | |||
1249 | 71 aa conserved hypothetical protein | |||
1250 | R | Ppa10489ORF18030P (99% identity) | AcaSM1ORF1251P | |
1251 | M | M.Ppa10489ORF18030P (66% identity) | M.AcaSM1ORF1251P | |
1252 | ISChy9, transposase orfB | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1992 | 88 aa hypothetical protein | |||
1993 | R | AcaMTH04MrrP (100% identity) | AcaSM1MrrP | |
1994 | 112 aa conserved hypothetical protein |