Escherichia coli UMNF18 |
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Putative Escherichia coli UMNF18 RM systems
Ref: Johnson,T.J. et al. unpublished
REBASE ref # 13055
| Sequence length: | GenBank #: | |
| Chromosome: | 5,239,207 bp | CP002890 |
| plasmid pUMNF18_103: | 103,130 bp | CP002894 |
| plasmid pUMNF18_IncFV: | 103,624 bp | CP002893 |
| plasmid pUMNF18_IncI1: | 69,065 bp | CP002891 |
REBASE acronym: Eco18
Org_num: 7285
All begin UMNF18_, UMNF18_IncI, UMNF18_pIncFV, UMNF18_pP
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5321 | 540 aa hypothetical protein | |||
| 5322 | S | S.EcosC41ORF22705P (100% identity) | S.Eco18ORF5323P | |
| 5323 | M | M.EcoMB57ORF19930P (100% identity) | M.Eco18ORF5323P | |
| 5324 | R | EcoMB57ORF19930P (100% identity) | Eco18ORF5323P | |
| 5325 | ISL3 family transposase domain protein | |||
| 5405 | multidrug resistance protein mdtM | |||
| 5406 | S | S.Ecos15955ORF12100P (100% identity) | S.Eco18ORF5407P | |
| 5407 | M | M.Ecos15955ORF12100P (100% identity) | M.Eco18ORF5407P | |
| 5408 | R | Ecos15955ORF12100P (99% identity) | Eco18ORF5407P | |
| 5409 | mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 795 | 39 aa hypothetical protein | |||
| 796 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco18ORF796P |
| 797 | 121 aa conserved hypothetical protein NinX | |||
| 910 | phage/conjugal plasmid C-4 type zinc finger | |||
| 911 | M | M.EcosBORF4330P (100% identity) | GATC | M.Eco18ORF911P |
| 912 | bacteriophage replication protein A (GPA) family | |||
| 1092 | 65 aa conserved hypothetical protein | |||
| ??? | M | M.Eco45S0C06ORF14065P (97% identity) | M.Eco18ORF1093P | |
| 1097 | 63 aa hypothetical protein | |||
| 1341 | 60 aa hypothetical protein | |||
| 1342 | RM | SflLIN17ORF3140P (100% identity) | Eco18ORF1342P | |
| 1343 | sea12 | |||
| 1648 | 53 aa conserved hypothetical protein | |||
| 1649 | M | DNA methylase family protein | M.Eco18ORF1648P | |
| 1653 | shiga-like toxin 2 subunit A | |||
| 2361 | 58 aa hypothetical protein | |||
| 2364 | M | M.EcoP136ORF10095P (100% identity) | M.Eco18ORF2364P | |
| 2365 | 65 aa conserved hypothetical protein | |||
| 2469 | carboxylate/amino acid/amine transporter family | |||
| 2468 | V | V.EcoP136DcmP (100% identity) | V.Eco18DcmP | |
| 2470 | M | M.EcoP136DcmP (100% identity) | CCWGG | M.Eco18DcmP |
| 2471 | HD domain protein | |||
| 3343 | ribosomal subunit interface protein | |||
| 3344 | M | M.Ecos154ORF1441P (98% identity) | M.Eco18ORF3344P | |
| 3345 | ogr/Delta-like zinc finger family protein | |||
| 3419 | ssrA-binding protein | |||
| 3420 | R | Sso8033ORF3755P (99% identity) | CCWGG | Eco18ORF3421P |
| 3421 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.Eco18ORF3421P |
| 3422 | phage tail fibre repeat family protein | |||
| 3431 | ATP-dependent protease domain protein | |||
| ??? | M | M.Eco4356ORFCP (61% identity) | M.Eco18ORF3432P | |
| 3434 | uncharacterized protein yfdN | |||
| 4169 | bacterial regulatory protein, Fis family | |||
| 4170 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco18ORF4170P |
| 4171 | uncharacterized protein yhdU | |||
| 4300 | ribulose-phosphate 3-epimerase | |||
| 4301 | M | DNA adenine methylase | GATC | M.Eco18DamP |
| 4302 | protein damX | |||
| plasmid pUMNF18_103 | ||||
| 7052 | recombination-associated protein RdgC | |||
| 7053 | M | M.EcoSTEFF1ORF24540P (96% identity) | M.Eco18ORF7053P | |
| 7054 | tellurite or colicin resistance protein | |||
| plasmid pUMNF18_IncFV | ||||
| 57 | 141 aa conserved hypothetical protein | |||
| 58 | M | M.EcoPK8217ORF24325P (100% identity) | M.Eco18ORF58P | |
| 59 | 184 aa conserved hypothetical protein | |||
| plasmid pUMNF18_IncI1 | ||||
| 1033 | transposase protein | |||
| 1034 | M | M.SspPIBORF23080P (100% identity) | M.Eco18ORF34P | |
| 1035 | 144 aa conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5408 | type I restriction enzyme EcoKI R protein | |||
| 5409 | R | EcoP136MrrP (100% identity) | Eco18MrrP | |
| 5410 | cobW/HypB/UreG, nucleotide-binding domain | |||