Helicobacter pylori J99 |
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Putative Helicobacter pylori J99 RM systems
Ref: Alm,R.A. et al. Nature 397 (6715), 176-180 (1999)
REBASE ref # 5649
Complete sequence: 1,643,831 bp
GenBank #: AE001439 (NC_000921)
REBASE acronym: Hpy99
Org_num: 1531
All begin jhp_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 413 | polyphosphate kinase | |||
| 414 | S | S.HpyU428ORF2165P (100% identity) | CCANNNNNNTTT | S.Hpy99XX |
| 415 | M | M.HpyU428ORF2165P (100% identity) | CCANNNNNNTTT | M.Hpy99XX |
| 416 | R | HpyJ99bORF4675P (78% identity) | CCANNNNNNTTT | Hpy99XXP |
| 417 | putative | |||
| 725 | Outer membrane protein | |||
| 726 | S | S.HpyS300ORF7330P (100% identity) | AAGNNNNNNCTC | S.Hpy99XVII |
| 727 | HEAVY-METAL CATION-TRANSPORTING P-TYPE | |||
| 783 | HYDROXYETHYLTHIAZOLE KINASE | |||
| 784 | R | HpyS300ORF7640P (86% identity) | RTAYNNNNNRTAY | Hpy99XVI |
| 785 | S | S.HpyS300ORF7640P (49% identity) | RTAYNNNNNRTAY | S.Hpy99XVI |
| 786 | M | M.HpyS300ORF7640P (99% identity) | RTAYNNNNNRTAY | M.Hpy99XVI |
| 787 | putative | |||
| 1421 | putative | |||
| 1422 | S | S.HpyJ99aORF4490P (98% identity) | CTTTANNNNNNCTT | S.Hpy99XV |
| 1423 | M | M.HpyS300ORF3070P (100% identity) | AAGNNNNNCTT | M.Hpy99XV |
| 1424 | R | HpyS300ORF3070P (99% identity) | CTTTANNNNNNCTT | Hpy99XVP |
| 1425 | putative | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 42 | putative | |||
| 43 | M | M1.HpyS300XI (100% identity) | CCTC | M1.Hpy99V |
| 44 | M | M2.HpyS300XIIP (100% identity) | CCTC | M2.Hpy99VP |
| 45 | TYPE II DNA MODIFICATION ENZYME | |||
| 44 | TYPE II DNA MODIFICATION ENZYME | |||
| 45 | M | M.HpyS300ORF3730P (100% identity) | GTSAC | M.Hpy99II |
| 46 | R | HpyU428IXP (100% identity) | GTSAC | Hpy99II |
| 47 | sodium/proline symporter | |||
| 83 | MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE | |||
| 84 | R | HpyS300VIP (100% identity) | GATC | Hpy99VIP |
| 85 | M | M.HpyS300VI (100% identity) | GATC | M.Hpy99VI |
| 86 | ALPHA(1,2)FUCOSYLTRANSFERASE | |||
| 163 | ELONGATION FACTOR P (EF-P) | |||
| 164 | R | R1.HpyS300ORF4375P (100% identity) | R1.Hpy99ORF165P | |
| 165 | R | R2.HpyU428ORF885P (100% identity) | R2.Hpy99ORF165P | |
| 166 | sialic acid synthase | |||
| 243 | EXODEOXYRIBONUCLEASE LARGE SUBUNIT | |||
| 244 | M | M.HpyS300IX (100% identity) | TCGA | M.Hpy99VII |
| 245 | putative | |||
| 245 | putative | |||
| ??? | R | HpyS300IIIP (100% identity) | CCGG | Hpy99VIIIP |
| 248 | M | M.HpyU418II (100% identity) | CCGG | M.Hpy99VIII |
| 249 | HEAT SHOCK PROTEIN | |||
| 429 | Outer membrane protein | |||
| 430 | M | M.HpyS300II (100% identity) | ATTAAT | M.Hpy99XIX |
| 431 | putative | |||
| 432 | putative | |||
| 433 | M | M.HpyS300ORF5785P (100% identity) | ACNGT | M.Hpy99ORF433P |
| 434 | R | putative | ACNGT | Hpy99ORF433P |
| 435 | TYPE II DNA MODIFICATION ENZYME | |||
| 434 | putative | |||
| 435 | M | M.HpyS300ORF5795P (100% identity) | ACGT | M.Hpy99XI |
| 436 | R | HpyS300ORF5795P (100% identity) | ACGT | Hpy99XIP |
| 437 | putative | |||
| 453 | DNA GYRASE SUBUNIT B | |||
| 454 | M | M.HpyNCI56VI (98% identity) | GTAC | M.Hpy99XII |
| 455 | R | HpyS300VIIIP (100% identity) | GTAC | Hpy99XIIP |
| 456 | Outer membrane protein | |||
| 611 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyS300ORF6730P (100% identity) | Hpy99ORF612P | |
| 614 | Outer membrane protein | |||
| 628 | putative | |||
| 629 | M | M.HpyS300IV (100% identity) | CCNNGG | M.Hpy99IV |
| 630 | R | HpyS300IVP (100% identity) | CCNNGG | Hpy99IV |
| 631 | putative | |||
| 753 | putative | |||
| 755 | R | HpyS300VP (100% identity) | CGWCG | Hpy99I |
| 756 | M | M.HpyS300V (100% identity) | CGWCG | M.Hpy99I |
| 757 | osmoprotection binding protein | |||
| 844 | FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN | |||
| 845 | R | HpyS300ORF7965P (100% identity) | GTNNAC | Hpy99ORF846P |
| 846 | M | M.HpyJ99bORF2440P (100% identity) | GTNNAC | M.Hpy99ORF846P |
| 847 | ATP-DEPENDENT HELICASE | |||
| 1011 | BIOTIN CARBOXYLASE | |||
| 1012 | M | M.HpyS300X (100% identity) | TCNNGA | M.Hpy99XVIII |
| 1013 | R | HpySP202XP (100% identity) | TCNNGA | Hpy99XVIIIP |
| 1014 | putative | |||
| 1130 | putative | |||
| 1131 | M | M.HpyS300I (99% identity) | CATG | M.Hpy99X |
| 1132 | putative | |||
| 1269 | CARBOXYL-TERMINAL PROTEASE | |||
| 1270 | R | HpyS300VIIP (100% identity) | GANTC | Hpy99IXP |
| 1271 | M | M.HpyS300VII (100% identity) | GANTC | M.Hpy99IX |
| 1272 | putative | |||
| 1441 | putative | |||
| 1442 | R | HpyS300ORF3160P (100% identity) | GAAGA | Hpy99ORF1442P |
| 1443 | TRANSCRIPTIONAL REGULATOR | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1283 | TRANSCRIPTIONAL REGULATOR | |||
| 1284 | M | M.HpyS300ORF2305P (100% identity) | M.Hpy99ORF1284P | |
| 1285 | R | HpyS300ORF2305P (100% identity) | Hpy99ORF1284P | |
| 1286 | putative | |||
| 1295 | ENDONUCLEASE | |||
| 1296 | M | M.HpyU428ORF7410P (100% identity) | M.Hpy99ORF1296P | |
| 1297 | R | HpyS300ORF2380P (91% identity) | Hpy99ORF1296P | |
| 1298 | BIOTIN SYNTHETASE | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 461 | GLUTAMINE SYNTHETASE | |||
| 462 | R | HpyU408GmrSDP (91% identity) | Hpy99GmrSDP | |
| 463 | 50S RIBOSOMAL PROTEIN L9 | |||