Acidovorax species JS42 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Acidovorax species JS42 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 9922
| Sequence length: | GenBank #: | |
| Chromosome: | 4,448,856 bp | CP000539 (NC_008782) |
| plasmid pAOVO01: | 72,689 bp | CP000540 (NC_008765) |
| plasmid pAOVO02: | 63,609 bp | CP000541 (NC_008766) |
REBASE acronym: AspJS
Org_num: 4670
All begin Ajs_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2615 | transcriptional regulator, ArsR family | |||
| 2616 | M | M.Dsp3050ORF7015P (99% identity) | M.AspJSORF2616P | |
| 2617 | 185 aa hypothetical protein | |||
| 2618 | R | Dsp3050ORF7015P (99% identity) | AspJSORF2616P | |
| 2619 | 174 aa hypothetical protein | |||
| 3605 | SMC domain protein | |||
| 3606 | R | Dsp3051ORF16555P (98% identity) | AspJSORF3609P | |
| 3607 | S | S.NeuORF2522P (99% identity) | S.AspJSORF3609P | |
| 3608 | transcriptional regulator | |||
| 3609 | M | M2.PbaEC28ORF19080P (97% identity) | M2.AspJSORF3609P | |
| 3610 | M | M1.PchAW1ORF22475P (98% identity) | M1.AspJSORF3609P | |
| 3611 | 65 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 194 | two component transcriptional regulator, winged | |||
| 195 | RM | Dsp3051ORF12035P (100% identity) | AspJSORF195AP | |
| 196 | DNA-damage-inducible protein D | |||
| 197 | RM | M.Dsp3051ORF12025P (90% identity) | AspJSORF195BP | |
| 198 | type III restriction system endonuclease, | |||
| 197 | Eco57I restriction endonuclease | |||
| 198 | RM | AcrJFORF2421P (80% identity) | AspJSORF198P | |
| 199 | major facilitator superfamily MFS_1 | |||
| 425 | FAD linked oxidase domain protein | |||
| 426 | M | M.TinORF106P (79% identity) | RGATCY | M.AspJSORF426P |
| 427 | R | TinORF107P (85% identity) | AspJSORF426P | |
| 428 | formyltetrahydrofolate deformylase | |||
| 565 | 82 aa hypothetical protein | |||
| 566 | M | M.DspMNS0ORF3060P (96% identity) | GATC | M.AspJSORF566P |
| 567 | 158 aa conserved hypothetical protein | |||
| 1308 | 252 aa conserved hypothetical protein | |||
| 1309 | M | M.AspJSORF1444P (100% identity) | M.AspJSORF1309P | |
| 1311 | DNA topoisomerase III | |||
| 1443 | 252 aa conserved hypothetical protein | |||
| 1444 | M | M.AspJSORF1309P (100% identity) | M.AspJSORF1444P | |
| 1445 | DNA topoisomerase III | |||
| 2195 | phage transcriptional regulator, AlpA | |||
| 2196 | M | M.PaeMH27ORF4688P (100% identity) | M.AspJSORF2196P | |
| 2197 | V | V.PaeMH27ORF4688P (100% identity) | V.AspJSORF2196P | |
| 2198 | helicase domain protein | |||
| 2198 | helicase domain protein | |||
| 2199 | RM | Pae14690ORFDP (62% identity) | AspJSORF2199AP | |
| 2200 | transposase, IS204/IS1001/IS1096/IS1165 family | |||
| 2201 | RM | Pae14690ORFDP (37% identity) | AspJSORF2199BP | |
| 2202 | DNA mismatch repair enzyme (predicted | |||
| 2201 | 512 aa hypothetical protein | |||
| 2202 | R | PaeMH27ORF4690P (98% identity) | GTCGAC | AspJSORF2202P |
| 2203 | helicase domain protein | |||
| 2529 | 684 aa conserved hypothetical protein | |||
| 2530 | RM | PaePD2aORF4315P (79% identity) | AspJSORF2530P | |
| 2531 | phage transcriptional regulator, AlpA | |||
| plasmid pAOVO01 | ||||
| 4213 | phosphatidylserine/phosphatidylglycerophosphate/ | |||
| 4214 | M | M.CteYAZ2ORF49990P (100% identity) | M.AspJSORF4214P | |
| 4215 | 73 aa hypothetical protein | |||
| plasmid pAOVO02 | ||||
| 4251 | 72 aa conserved hypothetical protein | |||
| 4252 | M | M2.Dac909ORF310P (100% identity) | GCCGGC | M.AspJSORF4252P |
| 4253 | R | Dac909ORF310P (100% identity) | GCCGGC | AspJSORF4252P |
| 4254 | 68 aa hypothetical protein | |||
| 4257 | 176 aa conserved hypothetical protein | |||
| 4258 | M | M1.Dac909ORF310P (100% identity) | M.AspJSORF4258P | |
| 4259 | 143 aa conserved hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4077 | riboflavin synthase alpha chain | |||
| 4078 | R | DspMNS0ORF18205P (100% identity) | AspJSORF4081P | |
| 4079 | 200 aa hypothetical protein | |||
| 4080 | 397 aa conserved hypothetical protein | |||
| 4081 | M | M.Dsp3051ORF13700P (98% identity) | M.AspJSORF4081P | |
| 4082 | integral membrane sensor signal transduction | |||
| 4094 | Spermine synthase | |||
| 4095 | R | Dsp3050ORF18655P (99% identity) | AspJSORF4096P | |
| 4096 | M | M.Dsp3051ORF13610P (99% identity) | M.AspJSORF4096P | |
| 4097 | protein of unknown function DUF350 | |||