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Putative Helicobacter pylori 26695 RM systems
Ref: Tomb,J.-F. et al. Nature 388 (6642), 539-547 (1997)
REBASE ref # 4797
Complete sequence: 1,667,867 bp
GenBank #: AE000511 (NC_000915)
REBASE acronym: HpyA
Org_num: 1521
All begin HP_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
461 | predicted coding region HP0461 | |||
462 | S | S.HpyS299ORF3810P (100% identity) | S.HpyAORF463P | |
463 | M | M.HpyS299ORF3810P (100% identity) | M.HpyAORF463P | |
464 | R | HpyS299ORF3810P (100% identity) | HpyAORF463P | |
465 | 631 aa conserved hypothetical protein | |||
789 | predicted coding region HP0789 | |||
790 | S | S.HpyS299IV (100% identity) | CTANNNNNNNNTGT | S.HpyAXIII |
791 | cadmium-transporting ATPase, P-type (cadA) | |||
847 | predicted coding region HP0847 | |||
??? | S | S.HpyRif2ORF4365P (100% identity) | S.HpyAORF848P | |
850 | type I restriction enzyme M protein (hsdM) | |||
1401 | 235 aa conserved hypothetical protein | |||
1402 | R | HpyS299ORF7180P (100% identity) | HpyAORF1403P | |
1403 | M | M.HpyS299ORF7180P (100% identity) | M.HpyAORF1403P | |
1404 | S | S.HpyRif2ORF7260P (100% identity) | S.HpyAORF1403P | |
1405 | predicted coding region HP1405 | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
49 | predicted coding region HP0049 | |||
50 | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.HpyAVI |
51 | M | M1.HpyS299III (100% identity) | CCTC | M2.HpyAVIP |
52 | R | HpyRif1ORF230P (80% identity) | CCTC | HpyAVIP |
53 | predicted coding region HP0053 | |||
??? | HNH endonuclease family protein | |||
53 | R | HpyS299VIIIP (100% identity) | CCTTC | HpyAV |
54 | M | M.HpyS299VIII (100% identity) | CCTTC | M.HpyAV |
55 | proline permease (putP) | |||
90 | malonyl coenzyme A-acyl carrier protein | |||
91 | R | HpyS299VP (100% identity) | GATC | HpyAIII |
92 | M | M.HpyS299V (100% identity) | GATC | M.HpyAIII |
93 | predicted coding region HP0093 | |||
259 | exonuclease VII, large subunit (xseA) | |||
260 | M | M.HpyS299VII (100% identity) | TCGA | M.HpyAX |
261 | predicted coding region HP0261 | |||
261 | predicted coding region HP0261 | |||
262 | R | HpyS299ORF4845P (100% identity) | CCGG | HpyAORF263P |
263 | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.HpyAORF263P |
264 | ATP-dependent protease binding subunit (clpB) | |||
367 | predicted coding region HP0367 | |||
368 | R | predicted coding region HP0368 | TCNNGA | HpyAORF369P |
??? | M | M.HpyS299ORF4305P (100% identity) | TCNNGA | M.HpyAORF369P |
370 | biotin carboxylase (accC) | |||
477 | outer membrane protein (omp12) | |||
478 | M | M.HpyS299II (100% identity) | ATTAAT | M.HpyAVII |
479 | predicted coding region HP0479 | |||
480 | GTP-binding protein, fusA-homolog (yihK) | |||
??? | M | M.HpyRif2ORFEP (100% identity) | ACNGT | M.HpyAORF481P |
482 | R | HpyRif2ORFEP (100% identity) | ACNGT | HpyAORF481P |
483 | DNA methyltransferase | |||
482 | predicted coding region HP0482 | |||
483 | M | M.HpyS299ORF3700P (94% identity) | ACGT | M.HpyAORF483P |
484 | R | HpyS299ORF3700P (100% identity) | ACGT | HpyAORF483P |
485 | catalase-like protein | |||
501 | DNA gyrase, sub B (gyrB) | |||
??? | M | M.HpyRif2ORFDP (100% identity) | GTAC | M.HpyAORF502P |
??? | R | HpyS299ORF3600P (100% identity) | GTAC | HpyAORF502P |
506 | 403 aa conserved hypothetical secreted protein | |||
666 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
667 | RM | HpyCGRORF682AP (100% identity) | GGANNAG | HpyAXVIIIA |
668 | RM | HpyCGRORF682BP (100% identity) | GGANNAG | HpyAXVIIIB |
669 | M | HpyP79ORF405P (99% identity) | GGANNAG | M.HpyAXVIII |
670 | predicted coding region HP0670 | |||
908 | flagellar hook (flgE) | |||
909 | R | HpyS299ORF1570P (100% identity) | GTNNAC | HpyAIXP |
910 | M | M.HpyS299ORF1570P (100% identity) | GTNNAC | M.HpyAIXP |
911 | rep helicase, single-stranded DNA-dependent | |||
1120 | predicted coding region HP1120 | |||
1121 | M | M.HpyS299ORF435P (100% identity) | GCGC | M.HpyAVIII |
1122 | predicted coding region HP1122 | |||
1207 | predicted coding region HP1207 | |||
1208 | M | M.HpyS299I (100% identity) | CATG | M.HpyAI |
1209 | R | HpyRif2ORF6260P (100% identity) | CATG | HpyAIP |
1210 | serine acetyltransferase (cysE) | |||
1350 | protease | |||
1351 | R | HpyS299ORF8615P (100% identity) | GANTC | HpyAIV |
1352 | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.HpyAIV |
??? | N-6 DNA methylase | |||
1352 | adenine specific DNA methyltransferase (HINFIM) | |||
??? | RM | HpyP22ORFWP (95% identity) | HpyAORF1353P | |
1355 | nicotinate-nucleotide pyrophosphorylase (nadC) | |||
1352 | adenine specific DNA methyltransferase (HINFIM) | |||
??? | RM | HpyRif2ORF6990P (99% identity) | HpyAXVIP | |
1355 | nicotinate-nucleotide pyrophosphorylase (nadC) | |||
1365 | response regulator | |||
1366 | R | HpyS299ORF7360P (100% identity) | GAAGA | HpyAII |
1367 | M | M2.HpyS299ORF7360P (100% identity) | GAAGA | M1.HpyAII |
1368 | M | M2.HpySWT04XIII (100% identity) | GAAGA | M2.HpyAII |
??? | adenine-specific DNA methylase | |||
1470 | DNA polymerase I (polA) | |||
1471 | S | S.HpyRif2ORF7625P (100% identity) | S.HpyAORF1472P | |
1472 | RM | HpyS299ORF6805P (100% identity) | HpyAORF1472P | |
1473 | predicted coding region HP1473 | |||
1516 | predicted coding region HP1516 | |||
1517 | RM | HpyS299ORF6590P (100% identity) | GCGTA | HpyAXIV |
1518 | predicted coding region HP1518 | |||
1536 | predicted coding region HP1536 | |||
1537 | R | HpyS299ORF6490P (100% identity) | TGCA | HpyAORF1537P |
1538 | cytochrome c1 | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
591 | ferredoxin oxidoreductase, gamma subunit | |||
592 | R | HpyS299VIP (100% identity) | GCAG | HpyAXIP |
593 | M | M.HpyS299VI (95% identity) | GCAG | M.HpyAXI |
594 | predicted coding region HP0594 | |||
1368 | type IIS restriction enzyme M2 protein (mod) | |||
??? | M | M.HpyRif2ORF7075P (100% identity) | TCAG | M.HpyAXVII |
1371 | R | HpyS299ORF7350P (100% identity) | TCAG | HpyAXVIIP |
1372 | rod shape-determining protein (mreC) | |||
1520 | predicted coding region HP1520 | |||
1521 | R | HpyS299ORF6570P (100% identity) | HpyAORF1522P | |
1522 | M | M.HpyRif2ORFBP (100% identity) | M.HpyAORF1522P | |
1523 | DNA recombinase (recG) | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
512 | glutamine synthetase (glnA) | |||
513 | R | HpyS299GmrSD2P (100% identity) | HpyAGmrSDP | |
514 | ribosomal protein L9 (rpl9) |