Helicobacter bizzozeronii CIII-1 |
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Putative Helicobacter bizzozeronii CIII-1 RM systems
Ref: Schott,T. et al. unpublished
REBASE ref # 13298
| Sequence length: | GenBank #: | |
| Chromosome: | 1,755,458 bp | FR871757 (NC_015674) |
| plasmid phbz1: | 52,076 bp | FR871758 (NC_015670) |
REBASE acronym: HbiC
Org_num: 7163
All begin HBZC1_, HBZC1_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid phbz1 | ||||
| 340 | type I restriction-modification | |||
| 350 | R | Hsp21005ORF9420P (58% identity) | HbiCORF350P | |
| 360 | type I restriction-modification | |||
| 370 | type I restriction-modification system, M | |||
| 380 | M | M.Hsp21005ORF9420P (69% identity) | M.HbiCORF380P | |
| 390 | 61 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 670 | 70 aa hypothetical protein | |||
| ??? | R | Hsp21005ORF19760P (86% identity) | GGCC | HbiCORF700P |
| 700 | M | M.Hsp21005ORF19760P (93% identity) | GGCC | M.HbiCORF700P |
| 710 | 37 aa hypothetical protein | |||
| 1400 | 71 aa hypothetical protein | |||
| 1410 | M | M.HbiCORF16620P (94% identity) | M.HbiCORF1410P | |
| 1420 | 386 aa hypothetical protein | |||
| 2880 | selenocysteine-specific translation elongation | |||
| 2890 | R | HheASB1ORF2280P (87% identity) | RGATCY | HbiCORF2900P |
| 2900 | M | M.HheASB1ORF2280P (89% identity) | RGATCY | M.HbiCORF2900P |
| 2910 | modification methylase HpaII | |||
| 2900 | adenine-specific methyltransferase | |||
| 2910 | M | modification methylase HpaII | GCNGC | M.HbiCORF2910P |
| 2920 | 113 aa conserved hypothetical protein | |||
| 2930 | FIG00471231: hypothetical protein | |||
| 2940 | M | M.HaiASB7ORF14560P (90% identity) | CCWGG | M.HbiCORF2940P |
| 2950 | 307 aa hypothetical protein | |||
| 8660 | 351 aa hypothetical protein | |||
| 8670 | RM | Hsp0012ORF5700P (51% identity) | HbiCORF8670P | |
| 8680 | restriction modification enzyme | |||
| 8670 | type I restriction-modification | |||
| 8680 | RM | Hca12410ORF132P (7% identity) | HbiCORF8680P | |
| 8690 | carbamoyl-phosphate synthase large chain | |||
| 8960 | HNH endonuclease domain protein | |||
| 8970 | M | M.HfeORF6830P (76% identity) | CCGG | M.HbiCORF8970P |
| 8980 | fumarate hydratase class II | |||
| 9030 | transposase OrfB | |||
| 9040 | RM | HfeORF15480P (72% identity) | HbiCORF9040P | |
| 9050 | 247 aa hypothetical protein | |||
| 10120 | 38 aa hypothetical protein | |||
| 10130 | R | HbiMUVP (67% identity) | TCNNGA | HbiCORF10140P |
| 10140 | M | M.HciP01DORFGP (74% identity) | TCNNGA | M.HbiCORF10140P |
| 10150 | protein hydE | |||
| 12090 | FIG00711535: hypothetical protein | |||
| 12100 | M | M.DdeSSMORF146P (49% identity) | M.HbiCORF12100P | |
| 12110 | conserved protein | |||
| 13590 | transposase, orfA | |||
| 13600 | M | M.HsuHS1ORF1490P (61% identity) | CATG | M.HbiCORF13600P |
| 13610 | methyl-accepting chemotaxis signal transduction | |||
| 14370 | carboxynorspermidine dehydrogenase, putative | |||
| 14380 | M | M.HfeORF8000P (87% identity) | GANTC | M.HbiCORF14380P |
| 14390 | protein of unknown function DUF395, YeeE/YedE | |||
| 15910 | 388 aa hypothetical protein | |||
| 15920 | M | 250 aa hypothetical protein | M.HbiCORF15920P | |
| 15930 | 68 aa hypothetical protein | |||
| 16610 | 1587 aa conserved hypothetical mosaic | |||
| 16620 | M | M.HbiCORF1410P (94% identity) | M.HbiCORF16620P | |
| 16630 | 71 aa hypothetical protein | |||
| 17700 | 96 aa hypothetical protein | |||
| 17710 | M | M.RspKL1ORF14255P (27% identity) | M.HbiCORF17710P | |
| 17720 | 74 aa hypothetical protein | |||
| 18450 | Xanthine/uracil/thiamine/ascorbate permease | |||
| 18460 | R | Hci197ORF10920P (59% identity) | GATC | HbiCORF18470P |
| 18470 | M | M.HpyK044VII (66% identity) | GATC | M.HbiCORF18470P |
| 18480 | ribonucleotide reductase of class Ia | |||
| plasmid phbz1 | ||||
| 350 | type I restriction-modification | |||
| 360 | RM | Hwi430ORFNP (14% identity) | HbiCORF360P | |
| 370 | type I restriction-modification system, M | |||
| 640 | 75 aa hypothetical protein | |||
| 650 | R | HaiASB7ORF2170P (86% identity) | GCATC | HbiCORF660P |
| 660 | M | M2.HheASB1ORF10790P (89% identity) | GCATC | M1.HbiCORF660P |
| 670 | 43 aa hypothetical protein | |||
| 680 | M | M1.HheASB1ORF10790P (71% identity) | GCATC | M2.HbiCORF660P |
| 690 | 38 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1940 | 146 aa hypothetical protein | |||
| 1950 | R | Hsp21005ORF13820P (17% identity) | CAGCAG | HbiCORF1950P |
| 1960 | 53 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9970 | 63 aa hypothetical protein | |||
| 9980 | R | HaiASB7McrCP (29% identity) | HbiCMcrCP | |
| 9990 | 104 aa hypothetical protein | |||
| 18000 | ATP-dependent Clp protease ATP-binding subunit | |||
| 18010 | R | Hsp0012McrBBP (16% identity) | HbiCMcrB2P | |
| 18020 | R | Hsp21005McrC2P (69% identity) | HbiCMcrC2P | |
| 18030 | COG3657: Uncharacterized protein conserved in | |||