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Putative Escherichia coli AVS0972 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
Sequence length: | GenBank #: | |
Chromosome: | 5,038,283 bp | CP124387 |
plasmid pAVS0972-A: | 103,452 bp | CP124388 |
REBASE acronym: EcoS0972
Org_num: 67326
All begin QJB01_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
17130 | endoribonuclease SymE | |||
17135 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0972ORF17145P |
17140 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0972ORF17145P |
17145 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0972ORF17145P |
17150 | restriction endonuclease | |||
18940 | ash family protein | |||
18945 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0972ORF18950P |
18950 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0972ORF18950P |
18955 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0972ORF18950P |
18960 | type IV toxin-antitoxin system AbiEi family | |||
plasmid pAVS0972-A | ||||
25070 | IS1-like element IS1A family transposase | |||
25075 | M | M.SenceORFJP (94% identity) | M.EcoS0972ORF25075P | |
25080 | type II toxin-antitoxin system Phd/YefM family | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
3480 | drug/metabolite exporter YedA | |||
3485 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0972DcmP |
3490 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0972DcmP |
3495 | phosphohydrolase | |||
10675 | DNA-binding transcriptional regulator Fis | |||
10680 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0972ORF10680P |
10685 | DUF2556 family protein | |||
11275 | ribulose-phosphate 3-epimerase | |||
11280 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0972DamP |
11285 | cell division protein DamX | |||
12795 | 98 aa hypothetical protein | |||
12800 | R | SflFF80ORF21000P (100% identity) | YGGCCR | EcoS0972ORF12805P |
12805 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.EcoS0972ORF12805P |
12810 | integrase | |||
16775 | helix-turn-helix domain-containing protein | |||
16780 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0972ORF16780P |
16785 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0972ORF16780P |
16790 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0972ORF16780P |
16795 | McrC family protein | |||
22185 | 71 aa hypothetical protein | |||
22190 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0972ORF22190P | |
22195 | helix-turn-helix transcriptional regulator | |||
plasmid pAVS0972-A | ||||
25010 | 73 aa hypothetical protein | |||
25015 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS0972ORF25015P |
25020 | 103 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
16790 | Alw26I/Eco31I/Esp3I family type II restriction | |||
16795 | R | EcosS9McrCP (100% identity) | EcoS0972McrCP | |
16800 | R | EcosS3McrBP (100% identity) | EcoS0972McrBP | |
16805 | glycosyltransferase | |||
17145 | class I SAM-dependent DNA methyltransferase | |||
17150 | R | Ecou021MrrP (100% identity) | EcoS0972MrrP | |
17155 | BrnT family toxin |