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Putative Nocardia farcinica IFM 10152 RM systems
Ref: Ishikawa,J. et al. Proc. Natl. Acad. Sci. U.S.A. 101, 14925-14930 (2004)
REBASE ref # 8742
Sequence length: | GenBank #: | |
chromosome: | 6,021,225 bp | AP006618 (NC_006361) |
plasmid pNF1: | 184,026 bp | AP006619 (NC_006362) |
plasmid pNF2: | 87,093 bp | AP006620 (NC_006363) |
REBASE acronym: Nfa
Org_num: 4005
All begin NFA_, PNF1_, PNF2_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
chromosome | ||||
20580 | transposase | |||
20590 | M | M.Nsp01ORF13990P (76% identity) | M.NfaORF20590P | |
20600 | 176 aa hypothetical protein | |||
27600 | hydrolase | |||
27610 | M | M.Rrh630II (96% identity) | M.NfaORF27610P | |
27620 | S | S.Rho346ORF1190P (46% identity) | S.NfaORF27610P | |
27630 | putative | |||
27640 | 441 aa hypothetical protein | |||
27650 | R | NfaHB204ORF13550P (99% identity) | NfaORF27610P | |
27660 | glycosyl hydrolase | |||
28690 | 475 aa hypothetical protein | |||
28700 | R | restriction-modification system | NfaORF28700P | |
28710 | transposase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome | ||||
2320 | 218 aa hypothetical protein | |||
2330 | V | V.Rrh630ORF4853P (100% identity) | V.NfaORF2340P | |
2340 | M | M.NfaHB204ORF945P (100% identity) | M.NfaORF2340P | |
2350 | 189 aa hypothetical protein | |||
16200 | 230 aa hypothetical protein | |||
16210 | M | M.Nfa33949I (99% identity) | ATCGAT | M.NfaORF16210P |
16220 | transcriptional regulator | |||
40320 | 75 aa hypothetical protein | |||
40330 | M | M.MsmGORFAP (45% identity) | GATC | M.NfaORF40330P |
40340 | 85 aa hypothetical protein | |||
40360 | 268 aa hypothetical protein | |||
40370 | M | M.Msp421ORF3670P (73% identity) | M.NfaORF40370P | |
40380 | 136 aa hypothetical protein | |||
44430 | 556 aa hypothetical protein | |||
44440 | M | M.MphHY01ORF10600P (75% identity) | M.NfaORF44440P | |
44450 | helicase | |||
plasmid pNF1 | ||||
90 | 356 aa hypothetical protein | |||
100 | M | M.Nfa1509ORF29690P (99% identity) | M.NfaORF1100P | |
110 | 226 aa hypothetical protein | |||
plasmid pNF2 | ||||
210 | recombinase | |||
220 | RM | Nsp372ORF29755P (100% identity) | NfaORF2220P | |
230 | 42 aa hypothetical protein | |||
740 | 285 aa hypothetical protein | |||
750 | M | M.Nsp372ORF29575P (100% identity) | M.NfaORF2750P | |
760 | 71 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome | ||||
27620 | restriction-modification system | |||
27630 | R | NfaHB204MrrP (98% identity) | NfaMrrP | |
27640 | 441 aa hypothetical protein |