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Putative Escherichia coli C1-057 RM systems
Ref: Yang,H. et al. Genome Announc 4 (2) (2016)
REBASE ref # 21659
Contig set: 5,580,340 bp
GenBank #: LAZO00000000 (NZ_LAZO00000000)
REBASE acronym: EcoC1057
Org_num: 19074
All begin WY12_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
10350 | 94 aa hypothetical protein | |||
10355 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoC1057ORF10360P |
10360 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoC1057ORF10360P |
10365 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoC1057ORF10360P |
10370 | endoribonuclease SymE | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
24510 | 5-nucleotidase | |||
24525 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoC1057ORF24525P | |
24530 | TrmB family transcriptional regulator | |||
26385 | 73 aa hypothetical protein | |||
26390 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoC1057ORF26390P | |
26395 | 101 aa hypothetical protein | |||
25865 | TrmB family transcriptional regulator | |||
25870 | M | M.EcoZ1836ORF13250P (100% identity) | M.EcoC1057ORF25870P | |
25875 | 5-nucleotidase | |||
3920 | multidrug DMT transporter | |||
3925 | V | V.EcosPA8DcmP (100% identity) | V.EcoC1057DcmP | |
3930 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoC1057DcmP |
3935 | hydrolase | |||
8590 | LexA family transcriptional regulator | |||
8595 | M | M.EcoZ1836ORF22690P (100% identity) | GATC | M.EcoC1057ORF8595P |
8600 | 162 aa hypothetical protein | |||
10640 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoC1057ORF10640P |
10645 | helicase | |||
10740 | Polarity suppression protein | |||
10745 | M | M.EcoZ1836ORF24740P (96% identity) | RGGNCCY | M.EcoC1057ORF10745P |
??? | R | EcoS3ORF17765P (100% identity) | RGGNCCY | EcoC1057ORF10745P |
10755 | C | C.EcoZ1836ORF24740P (100% identity) | CTAAGNNNNNCTTAG | C.EcoC1057ORF10745P |
10760 | integrase | |||
16080 | cell division protein DamX | |||
16085 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC1057DamP |
16090 | ribulose-phosphate 3-epimerase | |||
16615 | 59 aa hypothetical protein | |||
16620 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoC1057ORF16620P |
16625 | Fis family transcriptional regulator | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
10370 | endoribonuclease SymE | |||
??? | R | EcoX21GmrDP (100% identity) | EcoC1057GmrDP | |
10380 | 293 aa hypothetical protein |