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Putative Nostoc punctiforme PCC 73102 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 10623
Sequence length: | GenBank #: | |
Chromosome: | 8,234,322 bp | CP001037 (NC_010628) |
plasmid pNPUN01: | 354,564 bp | CP001038 (NC_010631) |
plasmid pNPUN02: | 254,918 bp | CP001039 (NC_010632) |
REBASE acronym: Npu
Org_num: 3302
All begin Npun_AF, Npun_AR, Npun_BF, Npun_BR, Npun_F, Npun_R
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
3327 | 152 aa conserved hypothetical protein | |||
3328 | S | S.BspAD24ORF10105P (47% identity) | S.NpuORF3329P | |
3329 | M | M.Bfr67BORF14065P (67% identity) | M.NpuORF3329P | |
3330 | 217 aa conserved hypothetical protein | |||
4896 | Helicase superfamily 3 | |||
4897 | R | Aci21ORF4110P (90% identity) | NpuORF4898P | |
4898 | M | M.Aci21ORF4110P (95% identity) | M.NpuORF4898P | |
4899 | 84 aa hypothetical protein | |||
4900 | plasmid stabilization system | |||
4901 | S | S.Llu27648I (36% identity) | S.NpuORF4898P | |
4902 | 329 aa hypothetical protein | |||
5276 | protein of unknown function DUF820 | |||
??? | S | M.Nsp870ORF21720P (38% identity) | S.NpuORF5281P | |
5279 | transposase, IS4 family protein | |||
??? | M | M.Nsp870ORF21720P (39% identity) | M.NpuORF5281P | |
5282 | diguanylate cyclase/phosphodiesterase | |||
5345 | 94 aa hypothetical protein | |||
5346 | C | C.Ncf36ORF19570P (61% identity) | C.NpuORF5347P | |
5347 | N-6 DNA methylase | |||
5348 | S | S.PspG382ORF14285P (37% identity) | S.NpuORF5347P | |
5349 | R | MspMP1ORF20525P (75% identity) | NpuORF5347P | |
5350 | crossover junction endodeoxyribonuclease RuvC | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
700 | 158 aa conserved hypothetical protein | |||
701 | M | M.NspC057ORF8540P (96% identity) | GATC | M.NpuORF701P |
702 | protein of unknown function DUF751 | |||
1050 | FdxN element excision controlling factor | |||
1051 | M | M.Asp90ORF10012P (82% identity) | M.NpuORF1051P | |
??? | R | Asp90ORF10012P (83% identity) | NpuORF1051P | |
1054 | adenosylhomocysteinase | |||
1195 | anthranilate phosphoribosyltransferase | |||
1196 | M | M.NspN6ORF3207P (90% identity) | GGCC | M.NpuORF1196P |
1197 | phage Gp37Gp68 family protein | |||
2337 | PglZ domain protein | |||
2338 | RM | Aci21ORF57570P (84% identity) | NpuORF2338P | |
2339 | 757 aa hypothetical protein | |||
2472 | 108 aa conserved hypothetical protein | |||
2473 | M | M.Nsp53789ORF22630P (95% identity) | CMGCKG | M.NpuORF2473P |
2474 | extracellular solute-binding protein, family 5 | |||
2561 | 244 aa conserved hypothetical protein | |||
2562 | R | LspO77ORF4567P (87% identity) | CGTACG | NpuORF2563P |
2563 | M | M.LspO77ORF4567P (81% identity) | CGTACG | M.NpuORF2563P |
2564 | aminotransferase, class V | |||
2932 | lipid-A-disaccharide synthase | |||
2933 | M | M.Nsp53789ORF25035P (96% identity) | CGATCG | M.NpuORF2933P |
2934 | aldo/keto reductase | |||
3042 | 413 aa conserved hypothetical protein | |||
3043 | M | M.Cst7417ORF6325P (93% identity) | M.NpuORF3043P | |
3045 | sulphate transporter | |||
4342 | glycosyl transferase, group 1 | |||
4343 | M | M.Nsp53789ORF20885P (93% identity) | RCCGGY | M.NpuORF4343P |
4344 | deoxyribose-phosphate aldolase | |||
4490 | 532 aa conserved hypothetical protein | |||
4491 | M | M.Csp7507DndCP (93% identity) | M.NpuDndCP | |
4492 | IS200/IS605 family transposase | |||
4492 | IS200/IS605 family transposase | |||
4493 | M | M.NspC052DndDP (96% identity) | M.NpuDndDP | |
4494 | 128 aa conserved hypothetical protein | |||
4493 | 661 aa conserved hypothetical protein | |||
4494 | M | M.Ned1411DndEP (100% identity) | M.NpuDndEP | |
4495 | 485 aa conserved hypothetical protein | |||
4781 | precorrin-3B C17-methyltransferase | |||
4782 | C | C.Nsp24002ORF31200P (96% identity) | C.NpuORF4784P | |
4783 | R | Nsp5183ORF5160P (92% identity) | AGATCT | NpuORF4784P |
4784 | M | M.Ncf36ORF60140P (92% identity) | AGATCT | M.NpuORF4784P |
4785 | 129 aa conserved hypothetical protein | |||
5659 | 1179 aa conserved hypothetical protein | |||
5660 | RM | NspC052ORF36525P (81% identity) | NpuORF5660P | |
5661 | fdxN element excision controlling factor | |||
6309 | protein of unknown function DUF187 | |||
6310 | M | M.NspC057ORF12270P (90% identity) | GRCGYC | M.NpuORF6310P |
6311 | R | Asp7108ORFJP (72% identity) | GRCGYC | NpuORF6310P |
6313 | magnesium chelatase ATPase subunit I | |||
plasmid pNPUN01 | ||||
146 | protein of unknown function DUF1392 | |||
147 | M | M.Nsp0302ORF37355P (75% identity) | GTCGAC | M.NpuORF147P |
148 | 78 aa conserved hypothetical protein | |||
268 | 81 aa hypothetical protein | |||
269 | RM | Tsp7712ORF28315P (73% identity) | NpuORF269P | |
270 | helicase domain protein | |||
plasmid pNPUN02 | ||||
90 | helicase domain protein | |||
91 | RM | NspHK01ORF60740P (82% identity) | NpuORF91P | |
92 | 149 aa hypothetical protein | |||
119 | 134 aa conserved hypothetical protein | |||
??? | M | M.NpuORF147P (49% identity) | M.NpuORF120AP | |
121 | pseudogene | |||
??? | M | M.NspNUC1ORF7062P (24% identity) | M.NpuORF120BP | |
123 | transposase, IS4 family protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
4725 | 201 aa hypothetical protein | |||
4726 | R | Csp2100McrBP (58% identity) | NpuMcrBP | |
??? | R | NspKEnMcrCP (70% identity) | NpuMcrCP | |
4728 | transposase, IS4 family protein |