|
Putative Geminocystis species NIES-3708 RM systems
Ref: Hirose,Y. unpublished
REBASE ref # 19698
Sequence length: | GenBank #: | |
Chromosome: | 3,883,409 bp | AP014815 |
plasmid pGM01: | 60,790 bp | AP014816 |
plasmid pGM02: | 57,874 bp | AP014817 |
plasmid pGM04: | 16,994 bp | AP014819 |
REBASE acronym: Gsp3708
Org_num: 15137
All begin GM3708_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
786 | 608 aa hypothetical protein | |||
787 | R | Cap1201ORF3045P (81% identity) | Gsp3708ORF789P | |
788 | 155 aa hypothetical protein | |||
789 | M | M.Cap1201ORF3045P (91% identity) | M.Gsp3708ORF789P | |
790 | 58 aa hypothetical protein | |||
791 | protein of unknown function UPF0150 | |||
792 | S | S.MspMAB1ORF2047P (34% identity) | S.Gsp3708ORF789P | |
793 | prophage protein | |||
1310 | 120 aa hypothetical protein | |||
1311 | S | type I restriction-modification system | S1.Gsp3708ORF1312P | |
1312 | M | type I restriction-modification system | M.Gsp3708ORF1312P | |
1313 | 53 aa hypothetical protein | |||
1314 | 87 aa hypothetical protein | |||
1315 | 151 aa hypothetical protein | |||
1316 | 107 aa hypothetical protein | |||
1317 | 72 aa hypothetical protein | |||
1318 | 139 aa hypothetical protein | |||
1319 | S | S.GloSZORF2201P (31% identity) | S2.Gsp3708ORF1312P | |
1320 | S | type I restriction-modification system | S3.Gsp3708ORF1312P | |
1321 | 63 aa hypothetical protein | |||
1322 | 205 aa hypothetical protein | |||
1323 | mobile element protein | |||
1324 | mobile element protein | |||
1325 | 44 aa hypothetical protein | |||
1326 | 47 aa hypothetical protein | |||
1327 | 332 aa hypothetical protein | |||
1328 | R | Gsp3709ORF3728P (74% identity) | Gsp3708ORF1312P | |
1329 | 46 aa hypothetical protein | |||
1547 | 157 aa hypothetical protein | |||
1548 | M | M.Gsp3708ORF3586P (35% identity) | M.Gsp3708ORF1548P | |
1549 | 61 aa hypothetical protein | |||
2323 | 147 aa hypothetical protein | |||
2324 | S | S.Cap1201ORF15275P (55% identity) | S.Gsp3708ORF2327P | |
2325 | 84 aa hypothetical protein | |||
2326 | 87 aa hypothetical protein | |||
2327 | M | M.Cap1201ORF15275P (77% identity) | M.Gsp3708ORF2327P | |
2328 | type I restriction-modification system | |||
??? | R | Cap1201ORF15275P (96% identity) | Gsp3708ORF2327P | |
2331 | possible Transcriptional regulator | |||
3308 | 171 aa hypothetical protein | |||
??? | M | M.Cspa4ORF15390P (87% identity) | M.Gsp3708ORF3309P | |
3311 | 62 aa hypothetical protein | |||
3312 | MloA | |||
3313 | S | S.GthORF3272P (19% identity) | S.Gsp3708ORF3309P | |
3314 | 148 aa hypothetical protein | |||
3315 | 78 aa hypothetical protein | |||
3316 | R | Gsp3709ORF1375P (95% identity) | Gsp3708ORF3309P | |
3317 | 73 aa hypothetical protein | |||
plasmid pGM02 | ||||
3585 | 56 aa hypothetical protein | |||
3586 | M | M.Gsp3708ORF1548P (35% identity) | M.Gsp3708ORF3586P | |
3587 | 37 aa hypothetical protein | |||
3607 | choloylglycine hydrolase | |||
3608 | M | M.BicMT13ORF3265P (72% identity) | M.Gsp3708ORF3608P | |
3609 | S | S.SplZORFCP (43% identity) | S.Gsp3708ORF3608P | |
3610 | 69 aa hypothetical protein | |||
3611 | 135 aa hypothetical protein | |||
3612 | helix-turn-helix motif | |||
3613 | 60 aa hypothetical protein | |||
3614 | 144 aa hypothetical protein | |||
3615 | R | Afl81ORFG1P (66% identity) | Gsp3708ORF3608P | |
3564 | mobile element protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
99 | LSU ribosomal protein L7/L12 | |||
100 | RM | Cap3221ORF10600P (64% identity) | Gsp3708ORF100P | |
101 | protein of unknown function DUF393 | |||
108 | carbohydrate kinase | |||
109 | R | Cspa4ORF540P (84% identity) | Gsp3708ORF110P | |
110 | M | M.Cspa4ORF540P (91% identity) | GGNCC | M.Gsp3708ORF110P |
111 | light-dependent protochlorophyllide reductase | |||
768 | 257 aa hypothetical protein | |||
769 | M | M.Cspa4ORF3260P (85% identity) | CCWGG | M.Gsp3708ORF769P |
770 | GMP synthase [glutamine-hydrolyzing] | |||
776 | coproporphyrinogen III oxidase | |||
777 | RM | M.NspMS1ORF14490P (43% identity) | Gsp3708ORF777P | |
778 | 93 aa hypothetical protein | |||
1215 | 264 aa hypothetical protein | |||
1216 | RM | CspCCYORF7564P (66% identity) | Gsp3708ORF1216P | |
1217 | Tn7-like transposition protein D | |||
1271 | photosystem I subunit XI PsaL | |||
??? | M | M.CspB1200ORF11790P (84% identity) | TCTAGA | M.Gsp3708ORF1272P |
1274 | TRAP dicarboxylate transporter | |||
1437 | guanine deaminase | |||
??? | M | DNA methylase N-4/N-6 domain-containing protein | TCTAGA | M.Gsp3708ORF1438P |
??? | R | Gsp3709ORF2272P (78% identity) | TCTAGA | Gsp3708ORF1438P |
1442 | 69 aa hypothetical protein | |||
1527 | 75 aa hypothetical protein | |||
1528 | M | M.Cap3222ORF11975P (91% identity) | GCGC | M.Gsp3708ORF1528P |
1529 | 59 aa hypothetical protein | |||
1565 | 71 aa hypothetical protein | |||
1566 | M | M.Cap3222ORF11975P (94% identity) | GCGC | M.Gsp3708ORF1566P |
1567 | 81 aa hypothetical protein | |||
1666 | glycolate dehydrogenase | |||
1667 | RM | Cspa4ORF14215P (66% identity) | Gsp3708ORF1667P | |
1668 | 128 aa hypothetical protein | |||
1816 | 55 aa hypothetical protein | |||
1817 | RM | Cap1201ORF11640P (79% identity) | Gsp3708ORF1817P | |
1818 | CAB/ELIP/HLIP family protein | |||
2268 | 41 aa hypothetical protein | |||
2269 | M | M.CstHL69ORFHP (70% identity) | GATC | M.Gsp3708ORF2269P |
2270 | 176 aa hypothetical protein | |||
3318 | transcription-repair coupling factor | |||
??? | M | M.Gsp3709ORF3391P (33% identity) | CGATCG | M.Gsp3708ORF3319P |
3320 | modification methylase DsaV | |||
??? | DNA methyltransferase | |||
3320 | M | M.Gsp3708ORF3319P (32% identity) | GDGCHC | M.Gsp3708ORF3320P |
3322 | phosphopantothenoylcysteine decarboxylase | |||
3340 | type I restriction-modification system | |||
3341 | M | M.CspB1200ORF2935P (85% identity) | CCCGC | M1.Gsp3708ORF3341P |
3342 | R | CstHL69ORFNP (77% identity) | Gsp3708ORF3341P | |
3343 | M | M1.CstHL69ORFNP (82% identity) | CCCGC | M2.Gsp3708ORF3341P |
3344 | 38 aa hypothetical protein | |||
plasmid pGM01 | ||||
3550 | 133 aa hypothetical protein | |||
3551 | M | M.CspB1200ORF13300P (77% identity) | M.Gsp3708ORF3551P | |
3552 | 72 aa hypothetical protein | |||
plasmid pGM02 | ||||
3591 | 103 aa hypothetical protein | |||
3592 | M | M.Ssp7117ORF15040P (56% identity) | M.Gsp3708ORF3592P | |
3593 | 81 aa hypothetical protein | |||
plasmid pGM04 | ||||
3631 | tyrosine recombinase XerC | |||
3632 | RM | CspB1200ORF440P (57% identity) | Gsp3708ORF3632P | |
3633 | MloA protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
2069 | 515 aa hypothetical protein | |||
2070 | R | restriction enzyme LlaI protein | Gsp3708McrBP | |
2071 | 212 aa hypothetical protein |