# Xiphophorus maculatus genome, 729.663 Mbp of sequence in 20640 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 125077 171.42 5833 Acc65I GGTACC 80443 110.25 9070 AccI GTMKAC 460395 630.97 1584 AciI CCGC 2593381 3554.22 281 AclI AACGTT 251554 344.75 2900 AcuI CTGAAG 1168877 1601.94 624 AfeI AGCGCT 152143 208.51 4795 AflII CTTAAG 248395 340.42 2937 AflIII ACRYGT 937756 1285.19 778 AgeI ACCGGT 78712 107.87 9270 AluI AGCT 6254449 8571.70 116 AlwI GGATC 1339368 1835.60 544 ApaI GGGCCC 87797 120.33 8310 ApaLI GTGCAC 200889 275.32 3632 ApeKI GCWGC 3454812 4734.81 211 ApoI RAATTY 2574031 3527.70 283 AscI GGCGCGCC 1475 2.02 494686 AseI ATTAAT 882124 1208.95 827 AsiSI GCGATCGC 856 1.17 852409 AvaI CYCGRG 250640 343.50 2911 AvaII GGWCC 1079611 1479.60 675 AvrII CCTAGG 49632 68.02 14701 BaeGI GKGCMC 476036 652.41 1532 BamHI GGATCC 146240 200.42 4989 BanI GGYRCC 397044 544.15 1837 BanII GRGCYC 608269 833.63 1199 BbvI GCAGC 3454812 4734.81 211 BccI CCATC 2295834 3146.43 317 BceAI ACGGC 792077 1085.54 921 BciVI GTATCC 221249 303.22 3297 BclI TGATCA 449283 615.74 1624 BcoDI GTCTC 2037863 2792.88 358 BfuAI ACCTGC 679691 931.51 1073 BfuCI GATC 3140226 4303.67 232 BglII AGATCT 338006 463.24 2158 BlpI GCTNAGC 277649 380.52 2628 BmrI ACTGGG 488994 670.16 1492 BmtI GCTAGC 153885 210.90 4741 BpmI CTGGAG 967044 1325.33 754 BpuEI CTTGAG 535931 734.49 1361 BsaAI YACGTR 343633 470.95 2123 BsaHI GRCGYC 376910 516.55 1935 BsaI GGTCTC 344182 471.70 2119 BsaWI WCCGGW 341452 467.96 2136 BseRI GAGGAG 1042226 1428.37 700 BsgI GTGCAG 792925 1086.70 920 BsiEI CGRYCG 167438 229.47 4357 BsiHKAI GWGCWC 861596 1180.81 846 BsiWI CGTACG 44148 60.50 16527 BsmAI GTCTC 2037863 2792.88 358 BsmBI CGTCTC 346268 474.56 2107 BsmFI GGGAC 1093864 1499.14 667 BsmI GAATGC 504226 691.04 1447 BsoBI CYCGRG 250640 343.50 2911 Bsp1286I GDGCHC 1389857 1904.79 524 BspCNI CTCAG 3120726 4276.94 233 BspDI ATCGAT 110399 151.30 6609 BspEI TCCGGA 70598 96.75 10335 BspHI TCATGA 429838 589.09 1697 BspMI ACCTGC 679691 931.51 1073 BspQI GCTCTTC 171669 235.27 4250 BsrBI CCGCTC 235758 323.11 3094 BsrFI RCCGGY 318429 436.41 2291 BsrGI TGTACA 455599 624.40 1601 BsrI ACTGG 2465828 3379.41 295 BssHII GCGCGC 44081 60.41 16552 BssSI CACGAG 154691 212.00 4716 BstBI TTCGAA 78053 106.97 9348 BstEII GGTNACC 147941 202.75 4932 BstNI CCWGG 2060907 2824.46 354 BstUI CGCG 521097 714.16 1400 BstYI RGATCY 914245 1252.97 798 BstZ17I GTATAC 110214 151.05 6620 Bsu36I CCTNAGG 189947 260.32 3841 BtgI CCRYGG 410227 562.21 1778 BtgZI GCGATG 186357 255.40 3915 BtsCI GGATG 2301818 3154.63 316 ClaI ATCGAT 110399 151.30 6609 CviAII CATG 5696833 7807.49 128 CviKI-1 RGCY 15172702 20794.13 48 CviQI GTAC 2439480 3343.30 299 DdeI CTNAG 4606795 6313.59 158 DpnII GATC 3140226 4303.67 232 DraI TTTAAA 2003990 2746.46 364 EaeI YGGCCR 509301 697.99 1432 EagI CGGCCG 64643 88.59 11287 EarI CTCTTC 873121 1196.61 835 EciI GGCGGA 197806 271.09 3688 Eco53kI GAGCTC 267358 366.41 2729 EcoO109I RGGNCCY 440272 603.39 1657 EcoRI GAATTC 223934 306.90 3258 EcoRV GATATC 168968 231.57 4318 FatI CATG 5696833 7807.49 128 FauI CCCGC 542611 743.65 1344 Fnu4HI GCNGC 4160151 5701.47 175 FokI GGATG 2301818 3154.63 316 FseI GGCCGGCC 3355 4.60 217485 FspI TGCGCA 98721 135.30 7391 HaeII RGCGCY 446753 612.27 1633 HaeIII GGCC 2195495 3008.92 332 HgaI GACGC 713962 978.48 1021 HhaI GCGC 1213246 1662.75 601 HincII GTYRAC 796176 1091.16 916 HindIII AAGCTT 473583 649.04 1540 HinfI GANTC 3611647 4949.75 202 HinP1I GCGC 1213246 1662.75 601 HpaI GTTAAC 234483 321.36 3111 HpaII CCGG 1227763 1682.64 594 HphI GGTGA 2184429 2993.75 334 Hpy188I TCNGA 5285591 7243.88 138 Hpy99I CGWCG 400725 549.19 1820 HpyAV CCTTC 2404045 3294.73 303 HpyCH4III ACNGT 4487101 6149.55 162 HpyCH4IV ACGT 2046007 2804.04 356 HpyCH4V TGCA 7630878 10458.09 95 KasI GGCGCC 77172 105.76 9455 KpnI GGTACC 80443 110.25 9070 MboI GATC 3140226 4303.67 232 MboII GAAGA 3649319 5001.38 199 MfeI CAATTG 256639 351.72 2843 MluCI AATT 9751741 13364.72 74 MluI ACGCGT 36784 50.41 19836 MlyI GAGTC 1691504 2318.20 431 MmeI TCCRAC 854040 1170.46 854 MnlI CCTC 8826192 12096.26 82 MscI TGGCCA 254342 348.57 2868 MseI TTAA 10956003 15015.16 66 MspA1I CMGCKG 1133553 1553.53 643 MspI CCGG 1227763 1682.64 594 NaeI GCCGGC 83040 113.81 8786 NarI GGCGCC 77172 105.76 9455 NciI CCSGG 554117 759.42 1316 NcoI CCATGG 204000 279.58 3576 NdeI CATATG 286506 392.66 2546 NgoMIV GCCGGC 83040 113.81 8786 NheI GCTAGC 153885 210.90 4741 NlaIII CATG 5696833 7807.49 128 NmeAIII GCCGAG 195280 267.63 3736 NotI GCGGCCGC 2761 3.78 264274 NruI TCGCGA 18646 25.55 39132 NsiI ATGCAT 527630 723.11 1382 NspI RCATGY 1654969 2268.13 440 PacI TTAATTAA 51312 70.32 14220 PaeR7I CTCGAG 69337 95.03 10523 PciI ACATGT 613106 840.26 1190 PleI GAGTC 1691504 2318.20 431 PluTI GGCGCC 77172 105.76 9455 PmeI GTTTAAAC 21491 29.45 33952 PmlI CACGTG 97722 133.93 7466 PpuMI RGGWCCY 238587 326.98 3058 PsiI TTATAA 689509 944.97 1058 PspGI CCWGG 2060907 2824.46 354 PspOMI GGGCCC 87797 120.33 8310 PspXI VCTCGAGB 22185 30.40 32889 PstI CTGCAG 906725 1242.66 804 PvuI CGATCG 27976 38.34 26081 PvuII CAGCTG 766302 1050.21 952 RsaI GTAC 2439480 3343.30 299 RsrII CGGWCCG 35689 48.91 20445 SacI GAGCTC 267358 366.41 2729 SacII CCGCGG 42564 58.33 17142 SalI GTCGAC 69367 95.07 10518 SapI GCTCTTC 171669 235.27 4250 Sau3AI GATC 3140226 4303.67 232 Sau96I GGNCC 1977267 2709.84 369 SbfI CCTGCAGG 25225 34.57 28926 ScaI AGTACT 218413 299.33 3340 ScrFI CCNGG 2615024 3583.88 279 SexAI ACCWGGT 148751 203.86 4905 SfaNI GCATC 1987400 2723.72 367 SfcI CTRYAG 1720828 2358.39 424 SfoI GGCGCC 77172 105.76 9455 SgrAI CRCCGGYG 9403 12.89 77598 SmaI CCCGGG 55833 76.52 13068 SmlI CTYRAG 853663 1169.94 854 SnaBI TACGTA 95786 131.27 7617 SpeI ACTAGT 166178 227.75 4390 SphI GCATGC 239962 328.87 3040 SrfI GCCCGGGC 1357 1.86 537702 SspI AATATT 1261107 1728.34 578 StuI AGGCCT 225602 309.19 3234 StyD4I CCNGG 2615024 3583.88 279 StyI CCWWGG 599239 821.25 1217 SwaI ATTTAAAT 73733 101.05 9896 TaqI TCGA 1207305 1654.61 604 TfiI GAWTC 1920143 2631.55 380 TseI GCWGC 3454812 4734.81 211 Tsp45I GTSAC 2120554 2906.21 344 TspMI CCCGGG 55833 76.52 13068 TspRI CASTG 3447766 4725.15 211 XbaI TCTAGA 244227 334.71 2987 XhoI CTCGAG 69337 95.03 10523 XmaI CCCGGG 55833 76.52 13068 ZraI GACGTC 125077 171.42 5833