# Xiphophorus hellerii genome, 733.802 Mbp of sequence in 25 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 108807 148.28 6744 Acc65I GGTACC 69576 94.82 10546 AccI GTMKAC 392600 535.02 1869 AciI CCGC 2324389 3167.59 315 AclI AACGTT 209312 285.24 3505 AcuI CTGAAG 1008669 1374.58 727 AfeI AGCGCT 132844 181.04 5523 AflII CTTAAG 211811 288.65 3464 AflIII ACRYGT 801068 1091.67 916 AgeI ACCGGT 68423 93.24 10724 AluI AGCT 5391147 7346.86 136 AlwI GGATC 1159662 1580.35 632 ApaI GGGCCC 75746 103.22 9687 ApaLI GTGCAC 173467 236.39 4230 ApeKI GCWGC 2985135 4068.04 245 ApoI RAATTY 2213336 3016.26 331 AscI GGCGCGCC 1426 1.94 514587 AseI ATTAAT 749617 1021.55 978 AsiSI GCGATCGC 771 1.05 951754 AvaI CYCGRG 219552 299.20 3342 AvaII GGWCC 927691 1264.22 790 AvrII CCTAGG 42177 57.48 17398 BaeGI GKGCMC 412023 561.49 1780 BamHI GGATCC 126823 172.83 5786 BanI GGYRCC 348264 474.60 2107 BanII GRGCYC 525439 716.05 1396 BbvI GCAGC 2985135 4068.04 245 BccI CCATC 1969802 2684.38 372 BceAI ACGGC 699949 953.87 1048 BciVI GTATCC 191529 261.01 3831 BclI TGATCA 386827 527.15 1896 BcoDI GTCTC 1751912 2387.44 418 BfuAI ACCTGC 588740 802.31 1246 BfuCI GATC 2712378 3696.33 270 BglII AGATCT 289184 394.09 2537 BlpI GCTNAGC 239908 326.94 3058 BmrI ACTGGG 421303 574.14 1741 BmtI GCTAGC 133330 181.70 5503 BpmI CTGGAG 831906 1133.69 882 BpuEI CTTGAG 460400 627.42 1593 BsaAI YACGTR 278028 378.89 2639 BsaHI GRCGYC 332665 453.34 2205 BsaI GGTCTC 297065 404.83 2470 BsaWI WCCGGW 298610 406.94 2457 BseRI GAGGAG 894695 1219.26 820 BsgI GTGCAG 681837 929.18 1076 BsiEI CGRYCG 149092 203.18 4921 BsiHKAI GWGCWC 746407 1017.18 983 BsiWI CGTACG 25205 34.35 29113 BsmAI GTCTC 1751912 2387.44 418 BsmBI CGTCTC 299402 408.01 2450 BsmFI GGGAC 943328 1285.53 777 BsmI GAATGC 436264 594.53 1682 BsoBI CYCGRG 219552 299.20 3342 Bsp1286I GDGCHC 1203293 1639.81 609 BspCNI CTCAG 2687030 3661.79 273 BspDI ATCGAT 96164 131.05 7630 BspEI TCCGGA 61793 84.21 11875 BspHI TCATGA 369854 504.02 1984 BspMI ACCTGC 588740 802.31 1246 BspQI GCTCTTC 148836 202.83 4930 BsrBI CCGCTC 208336 283.91 3522 BsrFI RCCGGY 280967 382.89 2611 BsrGI TGTACA 388949 530.05 1886 BsrI ACTGG 2119004 2887.70 346 BssHII GCGCGC 40998 55.87 17898 BssSI CACGAG 135915 185.22 5398 BstBI TTCGAA 68295 93.07 10744 BstEII GGTNACC 128164 174.66 5725 BstNI CCWGG 1782750 2429.47 411 BstUI CGCG 479055 652.84 1531 BstYI RGATCY 786090 1071.26 933 BstZ17I GTATAC 92225 125.68 7956 Bsu36I CCTNAGG 163014 222.15 4501 BtgI CCRYGG 359773 490.29 2039 BtgZI GCGATG 167047 227.65 4392 BtsCI GGATG 1973153 2688.94 371 ClaI ATCGAT 96164 131.05 7630 CviAII CATG 4895499 6671.41 149 CviKI-1 RGCY 13105159 17859.25 55 CviQI GTAC 2068450 2818.81 354 DdeI CTNAG 3952448 5386.26 185 DpnII GATC 2712378 3696.33 270 DraI TTTAAA 1712685 2333.99 428 EaeI YGGCCR 446207 608.08 1644 EagI CGGCCG 57847 78.83 12685 EarI CTCTTC 753424 1026.74 973 EciI GGCGGA 176496 240.52 4157 Eco53kI GAGCTC 231363 315.29 3171 EcoO109I RGGNCCY 377569 514.54 1943 EcoRI GAATTC 193620 263.86 3789 EcoRV GATATC 146121 199.13 5021 FatI CATG 4895499 6671.41 149 FauI CCCGC 486505 662.99 1508 Fnu4HI GCNGC 3617711 4930.09 202 FokI GGATG 1973153 2688.94 371 FseI GGCCGGCC 2937 4.00 249847 FspI TGCGCA 87696 119.51 8367 HaeII RGCGCY 392552 534.96 1869 HaeIII GGCC 1901266 2590.98 385 HgaI GACGC 628654 856.71 1167 HhaI GCGC 1083194 1476.14 677 HincII GTYRAC 681569 928.82 1076 HindIII AAGCTT 406856 554.45 1803 HinfI GANTC 3115549 4245.76 235 HinP1I GCGC 1083194 1476.14 677 HpaI GTTAAC 197963 269.78 3706 HpaII CCGG 1086696 1480.91 675 HphI GGTGA 1895746 2583.46 387 Hpy188I TCNGA 4559901 6214.07 160 Hpy99I CGWCG 351520 479.04 2087 HpyAV CCTTC 2076883 2830.30 353 HpyCH4III ACNGT 3855768 5254.50 190 HpyCH4IV ACGT 1725173 2351.00 425 HpyCH4V TGCA 6537725 8909.38 112 KasI GGCGCC 67569 92.08 10860 KpnI GGTACC 69576 94.82 10546 MboI GATC 2712378 3696.33 270 MboII GAAGA 3146923 4288.52 233 MfeI CAATTG 218283 297.47 3361 MluCI AATT 8317566 11334.88 88 MluI ACGCGT 32436 44.20 22623 MlyI GAGTC 1457754 1986.58 503 MmeI TCCRAC 738641 1006.59 993 MnlI CCTC 7612651 10374.25 96 MscI TGGCCA 220182 300.06 3332 MseI TTAA 9336655 12723.66 78 MspA1I CMGCKG 987253 1345.39 743 MspI CCGG 1086696 1480.91 675 NaeI GCCGGC 72480 98.77 10124 NarI GGCGCC 67569 92.08 10860 NciI CCSGG 491401 669.66 1493 NcoI CCATGG 176591 240.65 4155 NdeI CATATG 244455 333.13 3001 NgoMIV GCCGGC 72480 98.77 10124 NheI GCTAGC 133330 181.70 5503 NlaIII CATG 4895499 6671.41 149 NmeAIII GCCGAG 173501 236.44 4229 NotI GCGGCCGC 2552 3.48 287540 NruI TCGCGA 16836 22.94 43585 NsiI ATGCAT 449331 612.33 1633 NspI RCATGY 1410608 1922.33 520 PacI TTAATTAA 43149 58.80 17006 PaeR7I CTCGAG 58584 79.84 12525 PciI ACATGT 521053 710.07 1408 PleI GAGTC 1457754 1986.58 503 PluTI GGCGCC 67569 92.08 10860 PmeI GTTTAAAC 18210 24.82 40296 PmlI CACGTG 85411 116.40 8591 PpuMI RGGWCCY 204218 278.30 3593 PsiI TTATAA 585888 798.43 1252 PspGI CCWGG 1782750 2429.47 411 PspOMI GGGCCC 75746 103.22 9687 PspXI VCTCGAGB 18504 25.22 39656 PstI CTGCAG 778342 1060.70 942 PvuI CGATCG 25063 34.15 29278 PvuII CAGCTG 660921 900.68 1110 RsaI GTAC 2068450 2818.81 354 RsrII CGGWCCG 31512 42.94 23286 SacI GAGCTC 231363 315.29 3171 SacII CCGCGG 38258 52.14 19180 SalI GTCGAC 60133 81.95 12202 SapI GCTCTTC 148836 202.83 4930 Sau3AI GATC 2712378 3696.33 270 Sau96I GGNCC 1702656 2320.32 430 SbfI CCTGCAGG 21895 29.84 33514 ScaI AGTACT 185242 252.44 3961 ScrFI CCNGG 2274151 3099.13 322 SexAI ACCWGGT 129048 175.86 5686 SfaNI GCATC 1724368 2349.91 425 SfcI CTRYAG 1475084 2010.19 497 SfoI GGCGCC 67569 92.08 10860 SgrAI CRCCGGYG 8621 11.75 85118 SmaI CCCGGG 49384 67.30 14859 SmlI CTYRAG 730795 995.90 1004 SnaBI TACGTA 63737 86.86 11512 SpeI ACTAGT 138991 189.41 5279 SphI GCATGC 206101 280.87 3560 SrfI GCCCGGGC 1241 1.69 591299 SspI AATATT 1074129 1463.78 683 StuI AGGCCT 190259 259.28 3856 StyD4I CCNGG 2274151 3099.13 322 StyI CCWWGG 518622 706.76 1414 SwaI ATTTAAAT 62609 85.32 11720 TaqI TCGA 1058209 1442.09 693 TfiI GAWTC 1657795 2259.18 442 TseI GCWGC 2985135 4068.04 245 Tsp45I GTSAC 1829200 2492.77 401 TspMI CCCGGG 49384 67.30 14859 TspRI CASTG 2956915 4029.58 248 XbaI TCTAGA 207614 282.93 3534 XhoI CTCGAG 58584 79.84 12525 XmaI CCCGGG 49384 67.30 14859 ZraI GACGTC 108807 148.28 6744