# Xiphophorus couchianus genome, 708.396 Mbp of sequence in 25 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 108813 153.60 6510 Acc65I GGTACC 68202 96.28 10386 AccI GTMKAC 390153 550.76 1815 AciI CCGC 2203917 3111.14 321 AclI AACGTT 215588 304.33 3285 AcuI CTGAAG 1000824 1412.80 707 AfeI AGCGCT 129247 182.45 5480 AflII CTTAAG 211112 298.01 3355 AflIII ACRYGT 801408 1131.30 883 AgeI ACCGGT 66576 93.98 10640 AluI AGCT 5360316 7566.83 132 AlwI GGATC 1143997 1614.91 619 ApaI GGGCCC 74477 105.13 9511 ApaLI GTGCAC 172766 243.88 4100 ApeKI GCWGC 2957313 4174.66 239 ApoI RAATTY 2191043 3092.96 323 AscI GGCGCGCC 1168 1.65 606503 AseI ATTAAT 751278 1060.53 942 AsiSI GCGATCGC 659 0.93 1074956 AvaI CYCGRG 211918 299.15 3342 AvaII GGWCC 918740 1296.93 771 AvrII CCTAGG 42150 59.50 16806 BaeGI GKGCMC 407274 574.92 1739 BamHI GGATCC 124955 176.39 5669 BanI GGYRCC 338940 478.46 2090 BanII GRGCYC 521289 735.87 1358 BbvI GCAGC 2957313 4174.66 239 BccI CCATC 1949874 2752.52 363 BceAI ACGGC 671132 947.40 1055 BciVI GTATCC 189044 266.86 3747 BclI TGATCA 384263 542.44 1843 BcoDI GTCTC 1743157 2460.71 406 BfuAI ACCTGC 582382 822.11 1216 BfuCI GATC 2682017 3786.04 264 BglII AGATCT 289315 408.41 2448 BlpI GCTNAGC 237623 335.44 2981 BmrI ACTGGG 418824 591.23 1691 BmtI GCTAGC 129791 183.22 5457 BpmI CTGGAG 827717 1168.44 855 BpuEI CTTGAG 457029 645.16 1550 BsaAI YACGTR 273832 386.55 2586 BsaHI GRCGYC 324552 458.15 2182 BsaI GGTCTC 295034 416.48 2401 BsaWI WCCGGW 289482 408.64 2447 BseRI GAGGAG 887662 1253.06 798 BsgI GTGCAG 680004 959.92 1041 BsiEI CGRYCG 139604 197.07 5074 BsiHKAI GWGCWC 740956 1045.96 956 BsiWI CGTACG 23805 33.60 29758 BsmAI GTCTC 1743157 2460.71 406 BsmBI CGTCTC 293591 414.44 2412 BsmFI GGGAC 933157 1317.28 759 BsmI GAATGC 433120 611.41 1635 BsoBI CYCGRG 211918 299.15 3342 Bsp1286I GDGCHC 1192830 1683.85 593 BspCNI CTCAG 2676291 3777.96 264 BspDI ATCGAT 93733 132.32 7557 BspEI TCCGGA 60146 84.90 11777 BspHI TCATGA 367071 518.17 1929 BspMI ACCTGC 582382 822.11 1216 BspQI GCTCTTC 147617 208.38 4798 BsrBI CCGCTC 201032 283.78 3523 BsrFI RCCGGY 270100 381.28 2622 BsrGI TGTACA 391555 552.73 1809 BsrI ACTGG 2107657 2975.25 336 BssHII GCGCGC 36593 51.66 19358 BssSI CACGAG 131546 185.70 5385 BstBI TTCGAA 65895 93.02 10750 BstEII GGTNACC 125896 177.72 5626 BstNI CCWGG 1761151 2486.11 402 BstUI CGCG 433961 612.60 1632 BstYI RGATCY 781468 1103.15 906 BstZ17I GTATAC 92980 131.25 7618 Bsu36I CCTNAGG 161797 228.40 4378 BtgI CCRYGG 350991 495.47 2018 BtgZI GCGATG 159396 225.01 4444 BtsCI GGATG 1953614 2757.80 362 ClaI ATCGAT 93733 132.32 7557 CviAII CATG 4886529 6898.02 144 CviKI-1 RGCY 12994606 18343.69 54 CviQI GTAC 2059087 2906.69 344 DdeI CTNAG 3941053 5563.34 179 DpnII GATC 2682017 3786.04 264 DraI TTTAAA 1715182 2421.22 413 EaeI YGGCCR 435277 614.45 1627 EagI CGGCCG 54755 77.29 12937 EarI CTCTTC 748239 1056.24 946 EciI GGCGGA 168005 237.16 4216 Eco53kI GAGCTC 229446 323.89 3087 EcoO109I RGGNCCY 375658 530.29 1885 EcoRI GAATTC 190977 269.59 3709 EcoRV GATATC 144639 204.18 4897 FatI CATG 4886529 6898.02 144 FauI CCCGC 461352 651.26 1535 Fnu4HI GCNGC 3555188 5018.64 199 FokI GGATG 1953614 2757.80 362 FseI GGCCGGCC 2829 3.99 250405 FspI TGCGCA 84077 118.69 8425 HaeII RGCGCY 380251 536.78 1862 HaeIII GGCC 1871848 2642.37 378 HgaI GACGC 606814 856.60 1167 HhaI GCGC 1028002 1451.17 689 HincII GTYRAC 677706 956.68 1045 HindIII AAGCTT 405475 572.38 1747 HinfI GANTC 3084491 4354.19 229 HinP1I GCGC 1028002 1451.17 689 HpaI GTTAAC 198401 280.07 3570 HpaII CCGG 1043930 1473.65 678 HphI GGTGA 1868781 2638.04 379 Hpy188I TCNGA 4525314 6388.11 156 Hpy99I CGWCG 326845 461.39 2167 HpyAV CCTTC 2054782 2900.61 344 HpyCH4III ACNGT 3828723 5404.77 185 HpyCH4IV ACGT 1716507 2423.09 412 HpyCH4V TGCA 6548553 9244.19 108 KasI GGCGCC 65400 92.32 10831 KpnI GGTACC 68202 96.28 10386 MboI GATC 2682017 3786.04 264 MboII GAAGA 3118563 4402.29 227 MfeI CAATTG 219564 309.95 3226 MluCI AATT 8316606 11740.05 85 MluI ACGCGT 30692 43.33 23080 MlyI GAGTC 1445030 2039.86 490 MmeI TCCRAC 728658 1028.60 972 MnlI CCTC 7548485 10655.74 93 MscI TGGCCA 218813 308.88 3237 MseI TTAA 9339610 13184.16 75 MspA1I CMGCKG 971125 1370.88 729 MspI CCGG 1043930 1473.65 678 NaeI GCCGGC 70627 99.70 10030 NarI GGCGCC 65400 92.32 10831 NciI CCSGG 471273 665.27 1503 NcoI CCATGG 176252 248.80 4019 NdeI CATATG 245895 347.11 2880 NgoMIV GCCGGC 70627 99.70 10030 NheI GCTAGC 129791 183.22 5457 NlaIII CATG 4886529 6898.02 144 NmeAIII GCCGAG 166824 235.50 4246 NotI GCGGCCGC 2316 3.27 305870 NruI TCGCGA 15267 21.55 46400 NsiI ATGCAT 453044 639.53 1563 NspI RCATGY 1420933 2005.84 498 PacI TTAATTAA 43314 61.14 16354 PaeR7I CTCGAG 57234 80.79 12377 PciI ACATGT 525772 742.20 1347 PleI GAGTC 1445030 2039.86 490 PluTI GGCGCC 65400 92.32 10831 PmeI GTTTAAAC 18138 25.60 39055 PmlI CACGTG 83484 117.85 8485 PpuMI RGGWCCY 203813 287.71 3475 PsiI TTATAA 589093 831.59 1202 PspGI CCWGG 1761151 2486.11 402 PspOMI GGGCCC 74477 105.13 9511 PspXI VCTCGAGB 18130 25.59 39073 PstI CTGCAG 776598 1096.28 912 PvuI CGATCG 23378 33.00 30301 PvuII CAGCTG 658174 929.10 1076 RsaI GTAC 2059087 2906.69 344 RsrII CGGWCCG 29641 41.84 23899 SacI GAGCTC 229446 323.89 3087 SacII CCGCGG 35987 50.80 19684 SalI GTCGAC 57719 81.48 12273 SapI GCTCTTC 147617 208.38 4798 Sau3AI GATC 2682017 3786.04 264 Sau96I GGNCC 1681407 2373.54 421 SbfI CCTGCAGG 21785 30.75 32517 ScaI AGTACT 185061 261.24 3827 ScrFI CCNGG 2232424 3151.38 317 SexAI ACCWGGT 127568 180.08 5553 SfaNI GCATC 1706934 2409.57 415 SfcI CTRYAG 1472935 2079.25 480 SfoI GGCGCC 65400 92.32 10831 SgrAI CRCCGGYG 7899 11.15 89681 SmaI CCCGGG 47334 66.82 14965 SmlI CTYRAG 725375 1023.97 976 SnaBI TACGTA 63560 89.72 11145 SpeI ACTAGT 139170 196.46 5090 SphI GCATGC 206849 292.00 3424 SrfI GCCCGGGC 1199 1.69 590822 SspI AATATT 1078421 1522.34 656 StuI AGGCCT 191166 269.86 3705 StyD4I CCNGG 2232424 3151.38 317 StyI CCWWGG 514144 725.79 1377 SwaI ATTTAAAT 62935 88.84 11256 TaqI TCGA 1022288 1443.10 692 TfiI GAWTC 1639461 2314.33 432 TseI GCWGC 2957313 4174.66 239 Tsp45I GTSAC 1814984 2562.10 390 TspMI CCCGGG 47334 66.82 14965 TspRI CASTG 2952710 4168.16 239 XbaI TCTAGA 210846 297.64 3359 XhoI CTCGAG 57234 80.79 12377 XmaI CCCGGG 47334 66.82 14965 ZraI GACGTC 108813 153.60 6510