# Thunnus orientalis genome, 684.497 Mbp of sequence in 133062 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 124434 181.79 5500 Acc65I GGTACC 81480 119.04 8400 AccI GTMKAC 608322 888.71 1125 AciI CCGC 2201996 3216.95 310 AclI AACGTT 182768 267.01 3745 AcuI CTGAAG 1087196 1588.31 629 AfeI AGCGCT 134200 196.06 5100 AflII CTTAAG 252574 368.99 2710 AflIII ACRYGT 1134003 1656.69 603 AgeI ACCGGT 62150 90.80 11013 AluI AGCT 6465510 9445.63 105 AlwI GGATC 1311944 1916.65 521 ApaI GGGCCC 99184 144.90 6901 ApaLI GTGCAC 310280 453.30 2206 ApeKI GCWGC 3507960 5124.87 195 ApoI RAATTY 2097640 3064.50 326 AscI GGCGCGCC 441 0.64 1552148 AseI ATTAAT 899219 1313.69 761 AsiSI GCGATCGC 553 0.81 1237789 AvaI CYCGRG 239804 350.34 2854 AvaII GGWCC 1069168 1561.98 640 AvrII CCTAGG 51698 75.53 13240 BaeGI GKGCMC 679452 992.63 1007 BamHI GGATCC 138071 201.71 4957 BanI GGYRCC 414929 606.18 1649 BanII GRGCYC 682240 996.70 1003 BbvI GCAGC 3507960 5124.87 195 BccI CCATC 2459362 3592.95 278 BceAI ACGGC 618502 903.59 1106 BciVI GTATCC 297671 434.88 2299 BclI TGATCA 504937 737.68 1355 BcoDI GTCTC 2404459 3512.74 284 BfuAI ACCTGC 777595 1136.01 880 BfuCI GATC 3136595 4582.33 218 BglII AGATCT 314728 459.79 2174 BlpI GCTNAGC 290923 425.02 2352 BmrI ACTGGG 535539 782.38 1278 BmtI GCTAGC 175627 256.58 3897 BpmI CTGGAG 930182 1358.93 735 BpuEI CTTGAG 610674 892.15 1120 BsaAI YACGTR 375905 549.17 1820 BsaHI GRCGYC 317055 463.19 2158 BsaI GGTCTC 372520 544.22 1837 BsaWI WCCGGW 243255 355.38 2813 BseRI GAGGAG 1351376 1974.26 506 BsgI GTGCAG 977546 1428.12 700 BsiEI CGRYCG 112659 164.59 6075 BsiHKAI GWGCWC 1100417 1607.63 622 BsiWI CGTACG 24103 35.21 28398 BsmAI GTCTC 2404459 3512.74 284 BsmBI CGTCTC 289991 423.66 2360 BsmFI GGGAC 1247205 1822.07 548 BsmI GAATGC 498433 728.17 1373 BsoBI CYCGRG 239804 350.34 2854 Bsp1286I GDGCHC 1783297 2605.26 383 BspCNI CTCAG 3488226 5096.04 196 BspDI ATCGAT 112364 164.16 6091 BspEI TCCGGA 48992 71.57 13971 BspHI TCATGA 507233 741.03 1349 BspMI ACCTGC 777595 1136.01 880 BspQI GCTCTTC 167787 245.12 4079 BsrBI CCGCTC 202691 296.12 3377 BsrFI RCCGGY 254249 371.44 2692 BsrGI TGTACA 643361 939.90 1063 BsrI ACTGG 2744901 4010.10 249 BssHII GCGCGC 28804 42.08 23763 BssSI CACGAG 165400 241.64 4138 BstBI TTCGAA 55405 80.94 12354 BstEII GGTNACC 150275 219.54 4554 BstNI CCWGG 1995508 2915.29 343 BstUI CGCG 332695 486.04 2057 BstYI RGATCY 863183 1261.05 792 BstZ17I GTATAC 180053 263.04 3801 Bsu36I CCTNAGG 218477 319.18 3133 BtgI CCRYGG 416620 608.65 1642 BtgZI GCGATG 181704 265.46 3767 BtsCI GGATG 2496427 3647.09 274 ClaI ATCGAT 112364 164.16 6091 CviAII CATG 6886150 10060.15 99 CviKI-1 RGCY 16334685 23863.76 41 CviQI GTAC 3046309 4450.43 224 DdeI CTNAG 4827443 7052.54 141 DpnII GATC 3136595 4582.33 218 DraI TTTAAA 1559224 2277.91 438 EaeI YGGCCR 527638 770.84 1297 EagI CGGCCG 36243 52.95 18886 EarI CTCTTC 985784 1440.16 694 EciI GGCGGA 149004 217.68 4593 Eco53kI GAGCTC 269348 393.50 2541 EcoO109I RGGNCCY 540386 789.46 1266 EcoRI GAATTC 229515 335.30 2982 EcoRV GATATC 244954 357.86 2794 FatI CATG 6886150 10060.15 99 FauI CCCGC 495329 723.64 1381 Fnu4HI GCNGC 4027184 5883.42 169 FokI GGATG 2496427 3647.09 274 FseI GGCCGGCC 2036 2.97 336197 FspI TGCGCA 92658 135.37 7387 HaeII RGCGCY 341523 498.94 2004 HaeIII GGCC 2315678 3383.03 295 HgaI GACGC 607392 887.35 1126 HhaI GCGC 935619 1366.87 731 HincII GTYRAC 933002 1363.05 733 HindIII AAGCTT 430026 628.24 1591 HinfI GANTC 3622565 5292.30 188 HinP1I GCGC 935619 1366.87 731 HpaI GTTAAC 286271 418.22 2391 HpaII CCGG 930768 1359.78 735 HphI GGTGA 2541191 3712.49 269 Hpy188I TCNGA 4906876 7168.58 139 Hpy99I CGWCG 257555 376.27 2657 HpyAV CCTTC 2336371 3413.26 292 HpyCH4III ACNGT 6043535 8829.16 113 HpyCH4IV ACGT 1836656 2683.22 372 HpyCH4V TGCA 8226271 12017.97 83 KasI GGCGCC 50470 73.73 13562 KpnI GGTACC 81480 119.04 8400 MboI GATC 3136595 4582.33 218 MboII GAAGA 3585551 5238.22 190 MfeI CAATTG 245346 358.43 2789 MluCI AATT 8583418 12539.74 79 MluI ACGCGT 24707 36.10 27704 MlyI GAGTC 1825121 2666.37 375 MmeI TCCRAC 787136 1149.95 869 MnlI CCTC 10527837 15380.39 65 MscI TGGCCA 324651 474.29 2108 MseI TTAA 10148317 14825.94 67 MspA1I CMGCKG 1187110 1734.28 576 MspI CCGG 930768 1359.78 735 NaeI GCCGGC 64543 94.29 10605 NarI GGCGCC 50470 73.73 13562 NciI CCSGG 432944 632.50 1581 NcoI CCATGG 241786 353.23 2831 NdeI CATATG 399168 583.15 1714 NgoMIV GCCGGC 64543 94.29 10605 NheI GCTAGC 175627 256.58 3897 NlaIII CATG 6886150 10060.15 99 NmeAIII GCCGAG 161115 235.38 4248 NotI GCGGCCGC 1390 2.03 492444 NruI TCGCGA 12196 17.82 56124 NsiI ATGCAT 576538 842.28 1187 NspI RCATGY 2062060 3012.52 331 PacI TTAATTAA 49292 72.01 13886 PaeR7I CTCGAG 68318 99.81 10019 PciI ACATGT 781397 1141.56 875 PleI GAGTC 1825121 2666.37 375 PluTI GGCGCC 50470 73.73 13562 PmeI GTTTAAAC 18976 27.72 36071 PmlI CACGTG 117861 172.19 5807 PpuMI RGGWCCY 287285 419.70 2382 PsiI TTATAA 666006 972.99 1027 PspGI CCWGG 1995508 2915.29 343 PspOMI GGGCCC 99184 144.90 6901 PspXI VCTCGAGB 20533 30.00 33336 PstI CTGCAG 876409 1280.37 781 PvuI CGATCG 21048 30.75 32520 PvuII CAGCTG 844281 1233.43 810 RsaI GTAC 3046309 4450.43 224 RsrII CGGWCCG 14257 20.83 48011 SacI GAGCTC 269348 393.50 2541 SacII CCGCGG 27567 40.27 24830 SalI GTCGAC 71068 103.83 9631 SapI GCTCTTC 167787 245.12 4079 Sau3AI GATC 3136595 4582.33 218 Sau96I GGNCC 1996156 2916.24 342 SbfI CCTGCAGG 23127 33.79 29597 ScaI AGTACT 263270 384.62 2599 ScrFI CCNGG 2428452 3547.79 281 SexAI ACCWGGT 135432 197.86 5054 SfaNI GCATC 2045037 2987.65 334 SfcI CTRYAG 1955595 2856.98 350 SfoI GGCGCC 50470 73.73 13562 SgrAI CRCCGGYG 7457 10.89 91792 SmaI CCCGGG 49503 72.32 13827 SmlI CTYRAG 931566 1360.95 734 SnaBI TACGTA 76624 111.94 8933 SpeI ACTAGT 195160 285.11 3507 SphI GCATGC 287384 419.85 2381 SrfI GCCCGGGC 1454 2.12 470768 SspI AATATT 1067018 1558.83 641 StuI AGGCCT 255981 373.97 2674 StyD4I CCNGG 2428452 3547.79 281 StyI CCWWGG 678166 990.75 1009 SwaI ATTTAAAT 57417 83.88 11921 TaqI TCGA 1117004 1631.86 612 TfiI GAWTC 1797444 2625.93 380 TseI GCWGC 3507960 5124.87 195 Tsp45I GTSAC 2568260 3752.04 266 TspMI CCCGGG 49503 72.32 13827 TspRI CASTG 4780187 6983.50 143 XbaI TCTAGA 207430 303.04 3299 XhoI CTCGAG 68318 99.81 10019 XmaI CCCGGG 49503 72.32 13827 ZraI GACGTC 124434 181.79 5500