# Takifugu rubripes genome, 391.468 Mbp of sequence in 6834 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 111285 284.28 3517 Acc65I GGTACC 61219 156.38 6394 AccI GTMKAC 252192 644.22 1552 AciI CCGC 2820021 7203.70 138 AclI AACGTT 119679 305.72 3270 AcuI CTGAAG 669257 1709.61 584 AfeI AGCGCT 126043 321.98 3105 AflII CTTAAG 94380 241.09 4147 AflIII ACRYGT 648971 1657.79 603 AgeI ACCGGT 69411 177.31 5639 AluI AGCT 3488010 8910.07 112 AlwI GGATC 999354 2552.84 391 ApaI GGGCCC 100475 256.66 3896 ApaLI GTGCAC 225508 576.06 1735 ApeKI GCWGC 2596826 6633.55 150 ApoI RAATTY 897070 2291.55 436 AscI GGCGCGCC 1689 4.31 231775 AseI ATTAAT 314152 802.50 1246 AsiSI GCGATCGC 1118 2.86 350150 AvaI CYCGRG 311722 796.29 1255 AvaII GGWCC 1007750 2574.28 388 AvrII CCTAGG 22141 56.56 17680 BaeGI GKGCMC 513517 1311.77 762 BamHI GGATCC 127106 324.69 3079 BanI GGYRCC 407763 1041.62 960 BanII GRGCYC 582861 1488.91 671 BbvI GCAGC 2596826 6633.55 150 BccI CCATC 1773613 4530.67 220 BceAI ACGGC 767107 1959.56 510 BciVI GTATCC 135953 347.29 2879 BclI TGATCA 240854 615.26 1625 BcoDI GTCTC 1408831 3598.84 277 BfuAI ACCTGC 514243 1313.63 761 BfuCI GATC 2008025 5129.47 194 BglII AGATCT 172111 439.66 2274 BlpI GCTNAGC 185850 474.75 2106 BmrI ACTGGG 372091 950.50 1052 BmtI GCTAGC 98002 250.34 3994 BpmI CTGGAG 738188 1885.69 530 BpuEI CTTGAG 278920 712.50 1403 BsaAI YACGTR 349849 893.68 1118 BsaHI GRCGYC 430332 1099.28 909 BsaI GGTCTC 269799 689.20 1450 BsaWI WCCGGW 282682 722.11 1384 BseRI GAGGAG 1024226 2616.37 382 BsgI GTGCAG 565717 1445.12 691 BsiEI CGRYCG 196399 501.70 1993 BsiHKAI GWGCWC 778131 1987.72 503 BsiWI CGTACG 28140 71.88 13911 BsmAI GTCTC 1408831 3598.84 277 BsmBI CGTCTC 312844 799.16 1251 BsmFI GGGAC 1026000 2620.90 381 BsmI GAATGC 267536 683.42 1463 BsoBI CYCGRG 311722 796.29 1255 Bsp1286I GDGCHC 1335260 3410.90 293 BspCNI CTCAG 1966478 5023.34 199 BspDI ATCGAT 72696 185.70 5385 BspEI TCCGGA 73279 187.19 5342 BspHI TCATGA 200142 511.26 1955 BspMI ACCTGC 514243 1313.63 761 BspQI GCTCTTC 133953 342.18 2922 BsrBI CCGCTC 269712 688.98 1451 BsrFI RCCGGY 314083 802.32 1246 BsrGI TGTACA 197207 503.76 1985 BsrI ACTGG 1577368 4029.36 248 BssHII GCGCGC 80477 205.58 4864 BssSI CACGAG 201123 513.77 1946 BstBI TTCGAA 42798 109.33 9146 BstEII GGTNACC 124746 318.66 3138 BstNI CCWGG 1712428 4374.37 228 BstUI CGCG 844128 2156.31 463 BstYI RGATCY 578372 1477.44 676 BstZ17I GTATAC 45868 117.17 8534 Bsu36I CCTNAGG 149334 381.47 2621 BtgI CCRYGG 416690 1064.43 939 BtgZI GCGATG 188567 481.69 2076 BtsCI GGATG 1671010 4268.57 234 ClaI ATCGAT 72696 185.70 5385 CviAII CATG 2994328 7648.97 130 CviKI-1 RGCY 10376568 26506.79 37 CviQI GTAC 1190699 3041.62 328 DdeI CTNAG 2508271 6407.34 156 DpnII GATC 2008025 5129.47 194 DraI TTTAAA 696569 1779.38 561 EaeI YGGCCR 445064 1136.91 879 EagI CGGCCG 74916 191.37 5225 EarI CTCTTC 601685 1537.00 650 EciI GGCGGA 200223 511.47 1955 Eco53kI GAGCTC 213266 544.78 1835 EcoO109I RGGNCCY 470166 1201.03 832 EcoRI GAATTC 150305 383.95 2604 EcoRV GATATC 91352 233.36 4285 FatI CATG 2994328 7648.97 130 FauI CCCGC 656888 1678.01 595 Fnu4HI GCNGC 3431182 8764.90 114 FokI GGATG 1671010 4268.57 234 FseI GGCCGGCC 2698 6.89 145095 FspI TGCGCA 85096 217.38 4600 HaeII RGCGCY 462499 1181.45 846 HaeIII GGCC 1945839 4970.62 201 HgaI GACGC 786356 2008.73 497 HhaI GCGC 1349708 3447.81 290 HincII GTYRAC 465615 1189.41 840 HindIII AAGCTT 189992 485.33 2060 HinfI GANTC 2150984 5494.66 181 HinP1I GCGC 1349708 3447.81 290 HpaI GTTAAC 111342 284.42 3515 HpaII CCGG 1245295 3181.09 314 HphI GGTGA 1642625 4196.06 238 Hpy188I TCNGA 2917948 7453.86 134 Hpy99I CGWCG 433994 1108.63 902 HpyAV CCTTC 1644406 4200.61 238 HpyCH4III ACNGT 2496170 6376.43 156 HpyCH4IV ACGT 1562637 3991.73 250 HpyCH4V TGCA 3932979 10046.74 99 KasI GGCGCC 107156 273.73 3653 KpnI GGTACC 61219 156.38 6394 MboI GATC 2008025 5129.47 194 MboII GAAGA 2057766 5256.53 190 MfeI CAATTG 105173 268.66 3722 MluCI AATT 3414823 8723.12 114 MluI ACGCGT 61264 156.50 6389 MlyI GAGTC 1077928 2753.55 363 MmeI TCCRAC 551283 1408.24 710 MnlI CCTC 7297967 18642.55 53 MscI TGGCCA 182756 466.85 2142 MseI TTAA 4169220 10650.21 93 MspA1I CMGCKG 905817 2313.90 432 MspI CCGG 1245295 3181.09 314 NaeI GCCGGC 94642 241.76 4136 NarI GGCGCC 107156 273.73 3653 NciI CCSGG 642838 1642.12 608 NcoI CCATGG 140751 359.55 2781 NdeI CATATG 137287 350.70 2851 NgoMIV GCCGGC 94642 241.76 4136 NheI GCTAGC 98002 250.34 3994 NlaIII CATG 2994328 7648.97 130 NmeAIII GCCGAG 224530 573.56 1743 NotI GCGGCCGC 4047 10.34 96730 NruI TCGCGA 21723 55.49 18020 NsiI ATGCAT 211808 541.06 1848 NspI RCATGY 841513 2149.63 465 PacI TTAATTAA 18267 46.66 21430 PaeR7I CTCGAG 57439 146.73 6815 PciI ACATGT 287027 733.21 1363 PleI GAGTC 1077928 2753.55 363 PluTI GGCGCC 107156 273.73 3653 PmeI GTTTAAAC 10008 25.57 39115 PmlI CACGTG 174464 445.67 2243 PpuMI RGGWCCY 255233 651.99 1533 PsiI TTATAA 211766 540.95 1848 PspGI CCWGG 1712428 4374.37 228 PspOMI GGGCCC 100475 256.66 3896 PspXI VCTCGAGB 17861 45.63 21917 PstI CTGCAG 580760 1483.54 674 PvuI CGATCG 32961 84.20 11876 PvuII CAGCTG 488282 1247.31 801 RsaI GTAC 1190699 3041.62 328 RsrII CGGWCCG 27412 70.02 14280 SacI GAGCTC 213266 544.78 1835 SacII CCGCGG 71193 181.86 5498 SalI GTCGAC 58954 150.60 6640 SapI GCTCTTC 133953 342.18 2922 Sau3AI GATC 2008025 5129.47 194 Sau96I GGNCC 1901669 4857.79 205 SbfI CCTGCAGG 20706 52.89 18906 ScaI AGTACT 76870 196.36 5092 ScrFI CCNGG 2355266 6016.49 166 SexAI ACCWGGT 95515 243.99 4098 SfaNI GCATC 1316952 3364.13 297 SfcI CTRYAG 1030269 2631.81 379 SfoI GGCGCC 107156 273.73 3653 SgrAI CRCCGGYG 14873 37.99 26320 SmaI CCCGGG 81707 208.72 4791 SmlI CTYRAG 430739 1100.32 908 SnaBI TACGTA 37518 95.84 10434 SpeI ACTAGT 58903 150.47 6645 SphI GCATGC 126762 323.81 3088 SrfI GCCCGGGC 2405 6.14 162772 SspI AATATT 379995 970.69 1030 StuI AGGCCT 158195 404.11 2474 StyD4I CCNGG 2355266 6016.49 166 StyI CCWWGG 402729 1028.77 972 SwaI ATTTAAAT 24535 62.67 15955 TaqI TCGA 893126 2281.48 438 TfiI GAWTC 1073056 2741.11 364 TseI GCWGC 2596826 6633.55 150 Tsp45I GTSAC 1453985 3714.18 269 TspMI CCCGGG 81707 208.72 4791 TspRI CASTG 1987371 5076.71 196 XbaI TCTAGA 87681 223.98 4464 XhoI CTCGAG 57439 146.73 6815 XmaI CCCGGG 81707 208.72 4791 ZraI GACGTC 111285 284.28 3517