# Takifugu flavidus genome, 378.032 Mbp of sequence in 34332 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 95719 253.20 3949 Acc65I GGTACC 53377 141.20 7082 AccI GTMKAC 222555 588.72 1698 AciI CCGC 2320228 6137.64 162 AclI AACGTT 105211 278.31 3593 AcuI CTGAAG 597127 1579.57 633 AfeI AGCGCT 108201 286.22 3493 AflII CTTAAG 84557 223.68 4470 AflIII ACRYGT 576058 1523.83 656 AgeI ACCGGT 59008 156.09 6406 AluI AGCT 3095686 8188.94 122 AlwI GGATC 885343 2341.98 426 ApaI GGGCCC 80765 213.65 4680 ApaLI GTGCAC 196230 519.08 1926 ApeKI GCWGC 2263880 5988.59 166 ApoI RAATTY 789264 2087.82 478 AscI GGCGCGCC 1117 2.95 338435 AseI ATTAAT 280713 742.56 1346 AsiSI GCGATCGC 887 2.35 426192 AvaI CYCGRG 261553 691.88 1445 AvaII GGWCC 867395 2294.50 435 AvrII CCTAGG 19536 51.68 19350 BaeGI GKGCMC 438956 1161.16 861 BamHI GGATCC 111529 295.02 3389 BanI GGYRCC 340230 900.00 1111 BanII GRGCYC 498304 1318.15 758 BbvI GCAGC 2263880 5988.59 166 BccI CCATC 1566185 4142.99 241 BceAI ACGGC 650935 1721.90 580 BciVI GTATCC 122409 323.81 3088 BclI TGATCA 215142 569.11 1757 BcoDI GTCTC 1250035 3306.69 302 BfuAI ACCTGC 452320 1196.51 835 BfuCI GATC 1787070 4727.29 211 BglII AGATCT 154183 407.86 2451 BlpI GCTNAGC 163369 432.16 2313 BmrI ACTGGG 328887 870.00 1149 BmtI GCTAGC 85753 226.84 4408 BpmI CTGGAG 650952 1721.95 580 BpuEI CTTGAG 247743 655.35 1525 BsaAI YACGTR 306378 810.45 1233 BsaHI GRCGYC 352561 932.62 1072 BsaI GGTCTC 238296 630.36 1586 BsaWI WCCGGW 241614 639.14 1564 BseRI GAGGAG 901894 2385.76 419 BsgI GTGCAG 501424 1326.40 753 BsiEI CGRYCG 157305 416.12 2403 BsiHKAI GWGCWC 682468 1805.32 553 BsiWI CGTACG 24406 64.56 15489 BsmAI GTCTC 1250035 3306.69 302 BsmBI CGTCTC 272745 721.49 1386 BsmFI GGGAC 886935 2346.19 426 BsmI GAATGC 238753 631.57 1583 BsoBI CYCGRG 261553 691.88 1445 Bsp1286I GDGCHC 1156237 3058.57 326 BspCNI CTCAG 1747328 4622.16 216 BspDI ATCGAT 64697 171.14 5843 BspEI TCCGGA 62195 164.52 6078 BspHI TCATGA 178197 471.38 2121 BspMI ACCTGC 452320 1196.51 835 BspQI GCTCTTC 119103 315.06 3173 BsrBI CCGCTC 224824 594.72 1681 BsrFI RCCGGY 256505 678.53 1473 BsrGI TGTACA 176302 466.37 2144 BsrI ACTGG 1402857 3710.94 269 BssHII GCGCGC 62620 165.65 6036 BssSI CACGAG 175801 465.04 2150 BstBI TTCGAA 37196 98.39 10163 BstEII GGTNACC 109479 289.60 3453 BstNI CCWGG 1495144 3955.07 252 BstUI CGCG 680699 1800.64 555 BstYI RGATCY 514815 1361.83 734 BstZ17I GTATAC 40318 106.65 9376 Bsu36I CCTNAGG 131954 349.05 2864 BtgI CCRYGG 347416 919.01 1088 BtgZI GCGATG 164310 434.65 2300 BtsCI GGATG 1480084 3915.23 255 ClaI ATCGAT 64697 171.14 5843 CviAII CATG 2665734 7051.60 141 CviKI-1 RGCY 9079794 24018.56 41 CviQI GTAC 1057808 2798.19 357 DdeI CTNAG 2231159 5902.03 169 DpnII GATC 1787070 4727.29 211 DraI TTTAAA 611710 1618.14 617 EaeI YGGCCR 373047 986.81 1013 EagI CGGCCG 55844 147.72 6769 EarI CTCTTC 538131 1423.50 702 EciI GGCGGA 165610 438.08 2282 Eco53kI GAGCTC 186496 493.33 2027 EcoO109I RGGNCCY 399181 1055.94 947 EcoRI GAATTC 134141 354.84 2818 EcoRV GATATC 82020 216.97 4609 FatI CATG 2665734 7051.60 141 FauI CCCGC 535499 1416.54 705 Fnu4HI GCNGC 2928387 7746.39 129 FokI GGATG 1480084 3915.23 255 FseI GGCCGGCC 1807 4.78 209204 FspI TGCGCA 72953 192.98 5181 HaeII RGCGCY 378656 1001.65 998 HaeIII GGCC 1651358 4368.30 228 HgaI GACGC 667057 1764.55 566 HhaI GCGC 1111985 2941.51 339 HincII GTYRAC 412173 1090.31 917 HindIII AAGCTT 169644 448.76 2228 HinfI GANTC 1915449 5066.89 197 HinP1I GCGC 1111985 2941.51 339 HpaI GTTAAC 99378 262.88 3803 HpaII CCGG 1026395 2715.10 368 HphI GGTGA 1452725 3842.86 260 Hpy188I TCNGA 2594111 6862.14 145 Hpy99I CGWCG 360422 953.42 1048 HpyAV CCTTC 1458458 3858.02 259 HpyCH4III ACNGT 2216650 5863.65 170 HpyCH4IV ACGT 1370889 3626.38 275 HpyCH4V TGCA 3495507 9246.58 108 KasI GGCGCC 80356 212.56 4704 KpnI GGTACC 53377 141.20 7082 MboI GATC 1787070 4727.29 211 MboII GAAGA 1838808 4864.15 205 MfeI CAATTG 92432 244.51 4089 MluCI AATT 3026913 8007.02 124 MluI ACGCGT 51918 137.34 7281 MlyI GAGTC 956497 2530.20 395 MmeI TCCRAC 486595 1287.18 776 MnlI CCTC 6431046 17011.89 58 MscI TGGCCA 160061 423.41 2361 MseI TTAA 3709943 9813.82 101 MspA1I CMGCKG 771551 2040.97 489 MspI CCGG 1026395 2715.10 368 NaeI GCCGGC 72337 191.35 5225 NarI GGCGCC 80356 212.56 4704 NciI CCSGG 521021 1378.24 725 NcoI CCATGG 122820 324.89 3077 NdeI CATATG 122377 323.72 3089 NgoMIV GCCGGC 72337 191.35 5225 NheI GCTAGC 85753 226.84 4408 NlaIII CATG 2665734 7051.60 141 NmeAIII GCCGAG 188328 498.18 2007 NotI GCGGCCGC 2489 6.58 151881 NruI TCGCGA 18062 47.78 20929 NsiI ATGCAT 189247 500.61 1997 NspI RCATGY 753309 1992.71 501 PacI TTAATTAA 16247 42.98 23267 PaeR7I CTCGAG 50234 132.88 7525 PciI ACATGT 257183 680.32 1469 PleI GAGTC 956497 2530.20 395 PluTI GGCGCC 80356 212.56 4704 PmeI GTTTAAAC 8960 23.70 42191 PmlI CACGTG 150340 397.69 2514 PpuMI RGGWCCY 220384 582.98 1715 PsiI TTATAA 188229 497.92 2008 PspGI CCWGG 1495144 3955.07 252 PspOMI GGGCCC 80765 213.65 4680 PspXI VCTCGAGB 15569 41.18 24281 PstI CTGCAG 511383 1352.75 739 PvuI CGATCG 28162 74.50 13423 PvuII CAGCTG 428347 1133.10 882 RsaI GTAC 1057808 2798.19 357 RsrII CGGWCCG 21619 57.19 17486 SacI GAGCTC 186496 493.33 2027 SacII CCGCGG 52146 137.94 7249 SalI GTCGAC 50812 134.41 7439 SapI GCTCTTC 119103 315.06 3173 Sau3AI GATC 1787070 4727.29 211 Sau96I GGNCC 1609852 4258.50 234 SbfI CCTGCAGG 17818 47.13 21216 ScaI AGTACT 68501 181.20 5518 ScrFI CCNGG 2016165 5333.31 187 SexAI ACCWGGT 84252 222.87 4486 SfaNI GCATC 1170314 3095.80 323 SfcI CTRYAG 914806 2419.91 413 SfoI GGCGCC 80356 212.56 4704 SgrAI CRCCGGYG 10990 29.07 34397 SmaI CCCGGG 64294 170.08 5879 SmlI CTYRAG 382534 1011.91 988 SnaBI TACGTA 33331 88.17 11341 SpeI ACTAGT 52497 138.87 7201 SphI GCATGC 112456 297.48 3361 SrfI GCCCGGGC 1661 4.39 227593 SspI AATATT 339367 897.72 1113 StuI AGGCCT 138600 366.64 2727 StyD4I CCNGG 2016165 5333.31 187 StyI CCWWGG 354353 937.36 1066 SwaI ATTTAAAT 21700 57.40 17420 TaqI TCGA 785289 2077.31 481 TfiI GAWTC 958952 2536.69 394 TseI GCWGC 2263880 5988.59 166 Tsp45I GTSAC 1285817 3401.34 294 TspMI CCCGGG 64294 170.08 5879 TspRI CASTG 1769678 4681.29 213 XbaI TCTAGA 78454 207.53 4818 XhoI CTCGAG 50234 132.88 7525 XmaI CCCGGG 64294 170.08 5879 ZraI GACGTC 95719 253.20 3949