# Stegastes partitus genome, 800.492 Mbp of sequence in 5818 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 197019 246.12 4063 Acc65I GGTACC 98535 123.09 8123 AccI GTMKAC 610371 762.49 1311 AciI CCGC 3541547 4424.21 226 AclI AACGTT 255793 319.54 3129 AcuI CTGAAG 1378668 1722.28 580 AfeI AGCGCT 243921 304.71 3281 AflII CTTAAG 237577 296.79 3369 AflIII ACRYGT 1398501 1747.05 572 AgeI ACCGGT 105023 131.20 7622 AluI AGCT 7735314 9663.20 103 AlwI GGATC 1639468 2048.08 488 ApaI GGGCCC 101766 127.13 7866 ApaLI GTGCAC 370406 462.72 2161 ApeKI GCWGC 5250451 6559.03 152 ApoI RAATTY 2136275 2668.70 374 AscI GGCGCGCC 1091 1.36 733723 AseI ATTAAT 760962 950.62 1051 AsiSI GCGATCGC 1441 1.80 555511 AvaI CYCGRG 436321 545.07 1834 AvaII GGWCC 1360600 1699.71 588 AvrII CCTAGG 34190 42.71 23413 BaeGI GKGCMC 755969 944.38 1058 BamHI GGATCC 183251 228.92 4368 BanI GGYRCC 540693 675.45 1480 BanII GRGCYC 861813 1076.60 928 BbvI GCAGC 5250451 6559.03 152 BccI CCATC 2921089 3649.12 274 BceAI ACGGC 1129791 1411.37 708 BciVI GTATCC 261352 326.49 3062 BclI TGATCA 523657 654.17 1528 BcoDI GTCTC 2775552 3467.31 288 BfuAI ACCTGC 997713 1246.37 802 BfuCI GATC 3645747 4554.38 219 BglII AGATCT 337121 421.14 2374 BlpI GCTNAGC 372176 464.93 2150 BmrI ACTGGG 595020 743.32 1345 BmtI GCTAGC 162727 203.28 4919 BpmI CTGGAG 1258939 1572.71 635 BpuEI CTTGAG 594720 742.94 1345 BsaAI YACGTR 559257 698.64 1431 BsaHI GRCGYC 565476 706.41 1415 BsaI GGTCTC 422307 527.56 1895 BsaWI WCCGGW 408013 509.70 1961 BseRI GAGGAG 1625941 2031.18 492 BsgI GTGCAG 1316855 1645.06 607 BsiEI CGRYCG 262469 327.88 3049 BsiHKAI GWGCWC 1394893 1742.54 573 BsiWI CGTACG 50638 63.26 15808 BsmAI GTCTC 2775552 3467.31 288 BsmBI CGTCTC 520630 650.39 1537 BsmFI GGGAC 1482371 1851.83 540 BsmI GAATGC 585924 731.95 1366 BsoBI CYCGRG 436321 545.07 1834 Bsp1286I GDGCHC 2155576 2692.81 371 BspCNI CTCAG 4184757 5227.73 191 BspDI ATCGAT 136741 170.82 5854 BspEI TCCGGA 80895 101.06 9895 BspHI TCATGA 518814 648.12 1542 BspMI ACCTGC 997713 1246.37 802 BspQI GCTCTTC 197510 246.74 4052 BsrBI CCGCTC 325615 406.77 2458 BsrFI RCCGGY 512058 639.68 1563 BsrGI TGTACA 615656 769.10 1300 BsrI ACTGG 3020253 3773.00 265 BssHII GCGCGC 56871 71.05 14075 BssSI CACGAG 357481 446.58 2239 BstBI TTCGAA 82685 103.29 9681 BstEII GGTNACC 210697 263.21 3799 BstNI CCWGG 2464920 3079.26 324 BstUI CGCG 745626 931.46 1073 BstYI RGATCY 1022979 1277.94 782 BstZ17I GTATAC 136999 171.14 5843 Bsu36I CCTNAGG 233687 291.93 3425 BtgI CCRYGG 549500 686.45 1456 BtgZI GCGATG 299237 373.82 2675 BtsCI GGATG 3056123 3817.81 261 ClaI ATCGAT 136741 170.82 5854 CviAII CATG 7138566 8917.72 112 CviKI-1 RGCY 19656677 24555.75 40 CviQI GTAC 3015268 3766.77 265 DdeI CTNAG 5610137 7008.36 142 DpnII GATC 3645747 4554.38 219 DraI TTTAAA 1913525 2390.44 418 EaeI YGGCCR 674385 842.46 1186 EagI CGGCCG 92274 115.27 8675 EarI CTCTTC 1006338 1257.15 795 EciI GGCGGA 232969 291.03 3436 Eco53kI GAGCTC 384927 480.86 2079 EcoO109I RGGNCCY 574202 717.31 1394 EcoRI GAATTC 268424 335.32 2982 EcoRV GATATC 212593 265.58 3765 FatI CATG 7138566 8917.72 112 FauI CCCGC 720116 899.59 1111 Fnu4HI GCNGC 6265105 7826.57 127 FokI GGATG 3056123 3817.81 261 FseI GGCCGGCC 4412 5.51 181435 FspI TGCGCA 114399 142.91 6997 HaeII RGCGCY 630334 787.43 1269 HaeIII GGCC 2845226 3554.35 281 HgaI GACGC 1108588 1384.88 722 HhaI GCGC 1609751 2010.95 497 HincII GTYRAC 1003923 1254.13 797 HindIII AAGCTT 474350 592.57 1687 HinfI GANTC 4509872 5633.88 177 HinP1I GCGC 1609751 2010.95 497 HpaI GTTAAC 282702 353.16 2831 HpaII CCGG 1765246 2205.20 453 HphI GGTGA 3016382 3768.16 265 Hpy188I TCNGA 6120492 7645.91 130 Hpy99I CGWCG 673166 840.94 1189 HpyAV CCTTC 2914469 3640.85 274 HpyCH4III ACNGT 6278790 7843.67 127 HpyCH4IV ACGT 2892591 3613.52 276 HpyCH4V TGCA 9700581 12118.28 82 KasI GGCGCC 92964 116.13 8610 KpnI GGTACC 98535 123.09 8123 MboI GATC 3645747 4554.38 219 MboII GAAGA 3965266 4953.54 201 MfeI CAATTG 198347 247.78 4035 MluCI AATT 8353403 10435.34 95 MluI ACGCGT 53949 67.39 14837 MlyI GAGTC 2307763 2882.93 346 MmeI TCCRAC 1055038 1317.99 758 MnlI CCTC 12447436 15549.74 64 MscI TGGCCA 320586 400.49 2496 MseI TTAA 10545192 13173.39 75 MspA1I CMGCKG 1657764 2070.93 482 MspI CCGG 1765246 2205.20 453 NaeI GCCGGC 141729 177.05 5648 NarI GGCGCC 92964 116.13 8610 NciI CCSGG 789622 986.42 1013 NcoI CCATGG 219651 274.40 3644 NdeI CATATG 342245 427.54 2338 NgoMIV GCCGGC 141729 177.05 5648 NheI GCTAGC 162727 203.28 4919 NlaIII CATG 7138566 8917.72 112 NmeAIII GCCGAG 341567 426.70 2343 NotI GCGGCCGC 3564 4.45 224604 NruI TCGCGA 26581 33.21 30115 NsiI ATGCAT 583120 728.45 1372 NspI RCATGY 2227970 2783.25 359 PacI TTAATTAA 49285 61.57 16242 PaeR7I CTCGAG 134878 168.49 5934 PciI ACATGT 832206 1039.62 961 PleI GAGTC 2307763 2882.93 346 PluTI GGCGCC 92964 116.13 8610 PmeI GTTTAAAC 25085 31.34 31911 PmlI CACGTG 195601 244.35 4092 PpuMI RGGWCCY 320850 400.82 2494 PsiI TTATAA 536569 670.30 1491 PspGI CCWGG 2464920 3079.26 324 PspOMI GGGCCC 101766 127.13 7866 PspXI VCTCGAGB 43126 53.87 18561 PstI CTGCAG 1259227 1573.07 635 PvuI CGATCG 43148 53.90 18552 PvuII CAGCTG 1090148 1361.85 734 RsaI GTAC 3015268 3766.77 265 RsrII CGGWCCG 39366 49.18 20334 SacI GAGCTC 384927 480.86 2079 SacII CCGCGG 64704 80.83 12371 SalI GTCGAC 123557 154.35 6478 SapI GCTCTTC 197510 246.74 4052 Sau3AI GATC 3645747 4554.38 219 Sau96I GGNCC 2456629 3068.90 325 SbfI CCTGCAGG 32235 40.27 24833 ScaI AGTACT 210769 263.30 3797 ScrFI CCNGG 3254542 4065.68 245 SexAI ACCWGGT 176731 220.78 4529 SfaNI GCATC 2675860 3342.77 299 SfcI CTRYAG 2348056 2933.27 340 SfoI GGCGCC 92964 116.13 8610 SgrAI CRCCGGYG 17194 21.48 46556 SmaI CCCGGG 86991 108.67 9202 SmlI CTYRAG 967175 1208.23 827 SnaBI TACGTA 102492 128.04 7810 SpeI ACTAGT 185870 232.19 4306 SphI GCATGC 298988 373.51 2677 SrfI GCCCGGGC 2392 2.99 334653 SspI AATATT 960605 1200.02 833 StuI AGGCCT 293308 366.41 2729 StyD4I CCNGG 3254542 4065.68 245 StyI CCWWGG 649978 811.97 1231 SwaI ATTTAAAT 70390 87.93 11372 TaqI TCGA 1759536 2198.07 454 TfiI GAWTC 2202109 2750.94 363 TseI GCWGC 5250451 6559.03 152 Tsp45I GTSAC 3092874 3863.72 258 TspMI CCCGGG 86991 108.67 9202 TspRI CASTG 5050154 6308.81 158 XbaI TCTAGA 201035 251.14 3981 XhoI CTCGAG 134878 168.49 5934 XmaI CCCGGG 86991 108.67 9202 ZraI GACGTC 197019 246.12 4063