# Sinocyclocheilus rhinocerous genome, 1655.770 Mbp of sequence in 164172 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 278872 168.42 5937 Acc65I GGTACC 165843 100.16 9983 AccI GTMKAC 1280528 773.37 1293 AciI CCGC 5931096 3582.08 279 AclI AACGTT 548298 331.14 3019 AcuI CTGAAG 2444119 1476.12 677 AfeI AGCGCT 434924 262.67 3807 AflII CTTAAG 581439 351.16 2847 AflIII ACRYGT 2272960 1372.75 728 AgeI ACCGGT 203552 122.93 8134 AluI AGCT 11582795 6995.41 142 AlwI GGATC 2830783 1709.65 584 ApaI GGGCCC 206491 124.71 8018 ApaLI GTGCAC 624421 377.12 2651 ApeKI GCWGC 5785820 3494.34 286 ApoI RAATTY 6064423 3662.60 273 AscI GGCGCGCC 2336 1.41 708805 AseI ATTAAT 2816295 1700.90 587 AsiSI GCGATCGC 3730 2.25 443906 AvaI CYCGRG 666914 402.78 2482 AvaII GGWCC 2103814 1270.60 787 AvrII CCTAGG 149201 90.11 11097 BaeGI GKGCMC 1362721 823.01 1215 BamHI GGATCC 304554 183.93 5436 BanI GGYRCC 872301 526.83 1898 BanII GRGCYC 1394914 842.46 1187 BbvI GCAGC 5785820 3494.34 286 BccI CCATC 4713580 2846.76 351 BceAI ACGGC 1779958 1075.00 930 BciVI GTATCC 522918 315.82 3166 BclI TGATCA 1115605 673.77 1484 BcoDI GTCTC 4499984 2717.76 367 BfuAI ACCTGC 1217805 735.49 1359 BfuCI GATC 7277218 4395.07 227 BglII AGATCT 766748 463.08 2159 BlpI GCTNAGC 434244 262.26 3812 BmrI ACTGGG 880890 532.01 1879 BmtI GCTAGC 242936 146.72 6815 BpmI CTGGAG 1785441 1078.31 927 BpuEI CTTGAG 1328129 802.12 1246 BsaAI YACGTR 1009377 609.61 1640 BsaHI GRCGYC 701178 423.48 2361 BsaI GGTCTC 762078 460.26 2172 BsaWI WCCGGW 714748 431.67 2316 BseRI GAGGAG 1687032 1018.88 981 BsgI GTGCAG 1667077 1006.83 993 BsiEI CGRYCG 429696 259.51 3853 BsiHKAI GWGCWC 2336997 1411.43 708 BsiWI CGTACG 79044 47.74 20947 BsmAI GTCTC 4499984 2717.76 367 BsmBI CGTCTC 707807 427.48 2339 BsmFI GGGAC 2320770 1401.63 713 BsmI GAATGC 1391202 840.21 1190 BsoBI CYCGRG 666914 402.78 2482 Bsp1286I GDGCHC 3684222 2225.08 449 BspCNI CTCAG 6082189 3673.33 272 BspDI ATCGAT 327385 197.72 5057 BspEI TCCGGA 149693 90.41 11061 BspHI TCATGA 1089164 657.80 1520 BspMI ACCTGC 1217805 735.49 1359 BspQI GCTCTTC 355990 215.00 4651 BsrBI CCGCTC 527012 318.29 3141 BsrFI RCCGGY 709795 428.68 2332 BsrGI TGTACA 1320579 797.56 1253 BsrI ACTGG 5027989 3036.65 329 BssHII GCGCGC 149823 90.49 11051 BssSI CACGAG 515655 311.43 3211 BstBI TTCGAA 308867 186.54 5360 BstEII GGTNACC 323079 195.12 5124 BstNI CCWGG 3440061 2077.62 481 BstUI CGCG 1852214 1118.64 893 BstYI RGATCY 1932776 1167.30 856 BstZ17I GTATAC 450718 272.21 3673 Bsu36I CCTNAGG 399776 241.44 4141 BtgI CCRYGG 1014496 612.70 1632 BtgZI GCGATG 462124 279.10 3582 BtsCI GGATG 4710974 2845.19 351 ClaI ATCGAT 327385 197.72 5057 CviAII CATG 14138995 8539.23 117 CviKI-1 RGCY 30838260 18624.73 53 CviQI GTAC 6587186 3978.32 251 DdeI CTNAG 8852901 5346.70 187 DpnII GATC 7277218 4395.07 227 DraI TTTAAA 5146499 3108.22 321 EaeI YGGCCR 1281033 773.68 1292 EagI CGGCCG 131831 79.62 12559 EarI CTCTTC 1720737 1039.24 962 EciI GGCGGA 417814 252.34 3962 Eco53kI GAGCTC 579498 349.99 2857 EcoO109I RGGNCCY 1022204 617.36 1619 EcoRI GAATTC 612914 370.17 2701 EcoRV GATATC 472355 285.28 3505 FatI CATG 14138995 8539.23 117 FauI CCCGC 1264706 763.82 1309 Fnu4HI GCNGC 7234352 4369.18 228 FokI GGATG 4710974 2845.19 351 FseI GGCCGGCC 4758 2.87 347997 FspI TGCGCA 342420 206.80 4835 HaeII RGCGCY 1002571 605.50 1651 HaeIII GGCC 5035292 3041.06 328 HgaI GACGC 1640005 990.48 1009 HhaI GCGC 3313730 2001.32 499 HincII GTYRAC 1788392 1080.10 925 HindIII AAGCTT 904297 546.15 1831 HinfI GANTC 8070456 4874.14 205 HinP1I GCGC 3313730 2001.32 499 HpaI GTTAAC 625280 377.64 2648 HpaII CCGG 2443187 1475.56 677 HphI GGTGA 4706300 2842.36 351 Hpy188I TCNGA 11101325 6704.63 149 Hpy99I CGWCG 772063 466.29 2144 HpyAV CCTTC 4279414 2584.55 386 HpyCH4III ACNGT 12023145 7261.36 137 HpyCH4IV ACGT 4918967 2970.80 336 HpyCH4V TGCA 18061857 10908.43 91 KasI GGCGCC 131896 79.66 12553 KpnI GGTACC 165843 100.16 9983 MboI GATC 7277218 4395.07 227 MboII GAAGA 7124263 4302.69 232 MfeI CAATTG 640473 386.81 2585 MluCI AATT 25106580 15163.09 65 MluI ACGCGT 141600 85.52 11693 MlyI GAGTC 3426348 2069.34 483 MmeI TCCRAC 1316803 795.28 1257 MnlI CCTC 16478274 9952.03 100 MscI TGGCCA 696311 420.54 2377 MseI TTAA 28259231 17067.13 58 MspA1I CMGCKG 2064610 1246.92 801 MspI CCGG 2443187 1475.56 677 NaeI GCCGGC 159812 96.52 10360 NarI GGCGCC 131896 79.66 12553 NciI CCSGG 1045034 631.15 1584 NcoI CCATGG 520307 314.24 3182 NdeI CATATG 1046693 632.15 1581 NgoMIV GCCGGC 159812 96.52 10360 NheI GCTAGC 242936 146.72 6815 NlaIII CATG 14138995 8539.23 117 NmeAIII GCCGAG 403066 243.43 4107 NotI GCGGCCGC 5225 3.16 316893 NruI TCGCGA 121547 73.41 13622 NsiI ATGCAT 1874001 1131.80 883 NspI RCATGY 4201493 2537.49 394 PacI TTAATTAA 184129 111.20 8992 PaeR7I CTCGAG 209718 126.66 7895 PciI ACATGT 1366400 825.24 1211 PleI GAGTC 3426348 2069.34 483 PluTI GGCGCC 131896 79.66 12553 PmeI GTTTAAAC 47371 28.61 34953 PmlI CACGTG 336398 203.17 4922 PpuMI RGGWCCY 538054 324.96 3077 PsiI TTATAA 2267166 1369.25 730 PspGI CCWGG 3440061 2077.62 481 PspOMI GGGCCC 206491 124.71 8018 PspXI VCTCGAGB 56199 33.94 29462 PstI CTGCAG 1318398 796.24 1255 PvuI CGATCG 114651 69.24 14441 PvuII CAGCTG 1264222 763.53 1309 RsaI GTAC 6587186 3978.32 251 RsrII CGGWCCG 47831 28.89 34617 SacI GAGCTC 579498 349.99 2857 SacII CCGCGG 108293 65.40 15289 SalI GTCGAC 146074 88.22 11335 SapI GCTCTTC 355990 215.00 4651 Sau3AI GATC 7277218 4395.07 227 Sau96I GGNCC 4068512 2457.17 406 SbfI CCTGCAGG 29304 17.70 56503 ScaI AGTACT 616734 372.48 2684 ScrFI CCNGG 4485095 2708.77 369 SexAI ACCWGGT 218001 131.66 7595 SfaNI GCATC 4817677 2909.63 343 SfcI CTRYAG 3311140 1999.76 500 SfoI GGCGCC 131896 79.66 12553 SgrAI CRCCGGYG 22117 13.36 74864 SmaI CCCGGG 128275 77.47 12907 SmlI CTYRAG 2119286 1279.94 781 SnaBI TACGTA 230972 139.50 7168 SpeI ACTAGT 524134 316.55 3159 SphI GCATGC 703723 425.01 2352 SrfI GCCCGGGC 3137 1.89 527819 SspI AATATT 3681047 2223.16 449 StuI AGGCCT 555754 335.65 2979 StyD4I CCNGG 4485095 2708.77 369 StyI CCWWGG 1418256 856.55 1167 SwaI ATTTAAAT 237224 143.27 6979 TaqI TCGA 3338869 2016.51 495 TfiI GAWTC 4644108 2804.80 356 TseI GCWGC 5785820 3494.34 286 Tsp45I GTSAC 5096365 3077.94 324 TspMI CCCGGG 128275 77.47 12907 TspRI CASTG 8812069 5322.04 187 XbaI TCTAGA 513152 309.92 3226 XhoI CTCGAG 209718 126.66 7895 XmaI CCCGGG 128275 77.47 12907 ZraI GACGTC 278872 168.42 5937