# Sebastes rubrivinctus genome, 756.297 Mbp of sequence in 68206 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 191364 253.03 3952 Acc65I GGTACC 182716 241.59 4139 AccI GTMKAC 735984 973.14 1027 AciI CCGC 3619089 4785.28 208 AclI AACGTT 317702 420.08 2380 AcuI CTGAAG 1055783 1395.99 716 AfeI AGCGCT 204355 270.20 3700 AflII CTTAAG 242155 320.19 3123 AflIII ACRYGT 1338948 1770.40 564 AgeI ACCGGT 122158 161.52 6191 AluI AGCT 6611105 8741.42 114 AlwI GGATC 1466554 1939.13 515 ApaI GGGCCC 127250 168.25 5943 ApaLI GTGCAC 319223 422.09 2369 ApeKI GCWGC 3955424 5229.99 191 ApoI RAATTY 1878394 2483.67 402 AscI GGCGCGCC 977 1.29 774100 AseI ATTAAT 1076676 1423.62 702 AsiSI GCGATCGC 1176 1.55 643109 AvaI CYCGRG 406361 537.30 1861 AvaII GGWCC 1391736 1840.20 543 AvrII CCTAGG 54042 71.46 13994 BaeGI GKGCMC 743470 983.04 1017 BamHI GGATCC 154368 204.11 4899 BanI GGYRCC 597030 789.41 1266 BanII GRGCYC 821515 1086.23 920 BbvI GCAGC 3955424 5229.99 191 BccI CCATC 2707147 3579.48 279 BceAI ACGGC 1202073 1589.42 629 BciVI GTATCC 310431 410.46 2436 BclI TGATCA 476156 629.59 1588 BcoDI GTCTC 2812182 3718.36 268 BfuAI ACCTGC 796571 1053.25 949 BfuCI GATC 3393498 4486.99 222 BglII AGATCT 304890 403.14 2480 BlpI GCTNAGC 305452 403.88 2475 BmrI ACTGGG 566521 749.07 1334 BmtI GCTAGC 179099 236.81 4222 BpmI CTGGAG 1056091 1396.40 716 BpuEI CTTGAG 613260 810.87 1233 BsaAI YACGTR 612626 810.03 1234 BsaHI GRCGYC 510868 675.49 1480 BsaI GGTCTC 496282 656.20 1523 BsaWI WCCGGW 498163 658.69 1518 BseRI GAGGAG 1844394 2438.72 410 BsgI GTGCAG 960798 1270.40 787 BsiEI CGRYCG 290521 384.14 2603 BsiHKAI GWGCWC 1235116 1633.11 612 BsiWI CGTACG 51875 68.59 14579 BsmAI GTCTC 2812182 3718.36 268 BsmBI CGTCTC 488982 646.55 1546 BsmFI GGGAC 1626870 2151.10 464 BsmI GAATGC 551432 729.12 1371 BsoBI CYCGRG 406361 537.30 1861 Bsp1286I GDGCHC 2041564 2699.42 370 BspCNI CTCAG 3452378 4564.85 219 BspDI ATCGAT 196833 260.26 3842 BspEI TCCGGA 84062 111.15 8996 BspHI TCATGA 499305 660.20 1514 BspMI ACCTGC 796571 1053.25 949 BspQI GCTCTTC 183143 242.16 4129 BsrBI CCGCTC 336549 445.00 2247 BsrFI RCCGGY 512226 677.28 1476 BsrGI TGTACA 626561 828.46 1207 BsrI ACTGG 2694001 3562.10 280 BssHII GCGCGC 60908 80.53 12417 BssSI CACGAG 319403 422.33 2367 BstBI TTCGAA 83510 110.42 9056 BstEII GGTNACC 182128 240.82 4152 BstNI CCWGG 2144815 2835.94 352 BstUI CGCG 792618 1048.03 954 BstYI RGATCY 886790 1172.54 852 BstZ17I GTATAC 245639 324.79 3078 Bsu36I CCTNAGG 237330 313.81 3186 BtgI CCRYGG 614561 812.59 1230 BtgZI GCGATG 284165 375.73 2661 BtsCI GGATG 2727472 3606.35 277 ClaI ATCGAT 196833 260.26 3842 CviAII CATG 7141447 9442.65 105 CviKI-1 RGCY 18082927 23909.83 41 CviQI GTAC 3628868 4798.21 208 DdeI CTNAG 4818838 6371.62 156 DpnII GATC 3393498 4486.99 222 DraI TTTAAA 1636229 2163.48 462 EaeI YGGCCR 743882 983.58 1016 EagI CGGCCG 95993 126.93 7878 EarI CTCTTC 1048972 1386.98 720 EciI GGCGGA 258806 342.20 2922 Eco53kI GAGCTC 312064 412.62 2423 EcoO109I RGGNCCY 687027 908.41 1100 EcoRI GAATTC 218314 288.66 3464 EcoRV GATATC 275206 363.89 2748 FatI CATG 7141447 9442.65 105 FauI CCCGC 800830 1058.88 944 Fnu4HI GCNGC 4837616 6396.45 156 FokI GGATG 2727472 3606.35 277 FseI GGCCGGCC 4484 5.93 168665 FspI TGCGCA 107546 142.20 7032 HaeII RGCGCY 536558 709.45 1409 HaeIII GGCC 2877359 3804.54 262 HgaI GACGC 980877 1296.95 771 HhaI GCGC 1442414 1907.21 524 HincII GTYRAC 1151241 1522.21 656 HindIII AAGCTT 370968 490.51 2038 HinfI GANTC 3923093 5187.24 192 HinP1I GCGC 1442414 1907.21 524 HpaI GTTAAC 404814 535.26 1868 HpaII CCGG 1810212 2393.52 417 HphI GGTGA 2728968 3608.33 277 Hpy188I TCNGA 5477886 7243.04 138 Hpy99I CGWCG 571188 755.24 1324 HpyAV CCTTC 2506729 3314.48 301 HpyCH4III ACNGT 6375744 8430.22 118 HpyCH4IV ACGT 3002162 3969.56 251 HpyCH4V TGCA 8468274 11197.03 89 KasI GGCGCC 82481 109.06 9169 KpnI GGTACC 182716 241.59 4139 MboI GATC 3393498 4486.99 222 MboII GAAGA 3642306 4815.98 207 MfeI CAATTG 245839 325.06 3076 MluCI AATT 8589329 11357.09 88 MluI ACGCGT 63221 83.59 11962 MlyI GAGTC 2010485 2658.33 376 MmeI TCCRAC 949544 1255.52 796 MnlI CCTC 12361586 16344.89 61 MscI TGGCCA 353668 467.63 2138 MseI TTAA 10939121 14464.06 69 MspA1I CMGCKG 1422255 1880.55 531 MspI CCGG 1810212 2393.52 417 NaeI GCCGGC 135436 179.08 5584 NarI GGCGCC 82481 109.06 9169 NciI CCSGG 808138 1068.55 935 NcoI CCATGG 252084 333.31 3000 NdeI CATATG 383382 506.92 1972 NgoMIV GCCGGC 135436 179.08 5584 NheI GCTAGC 179099 236.81 4222 NlaIII CATG 7141447 9442.65 105 NmeAIII GCCGAG 276997 366.25 2730 NotI GCGGCCGC 3605 4.77 209791 NruI TCGCGA 57959 76.64 13048 NsiI ATGCAT 612427 809.77 1234 NspI RCATGY 2169514 2868.60 348 PacI TTAATTAA 64659 85.49 11696 PaeR7I CTCGAG 109351 144.59 6916 PciI ACATGT 770055 1018.19 982 PleI GAGTC 2010485 2658.33 376 PluTI GGCGCC 82481 109.06 9169 PmeI GTTTAAAC 19040 25.18 39721 PmlI CACGTG 191747 253.53 3944 PpuMI RGGWCCY 403665 533.74 1873 PsiI TTATAA 752978 995.61 1004 PspGI CCWGG 2144815 2835.94 352 PspOMI GGGCCC 127250 168.25 5943 PspXI VCTCGAGB 32497 42.97 23272 PstI CTGCAG 920700 1217.38 821 PvuI CGATCG 45372 59.99 16668 PvuII CAGCTG 885621 1171.00 853 RsaI GTAC 3628868 4798.21 208 RsrII CGGWCCG 35653 47.14 21212 SacI GAGCTC 312064 412.62 2423 SacII CCGCGG 74480 98.48 10154 SalI GTCGAC 102720 135.82 7362 SapI GCTCTTC 183143 242.16 4129 Sau3AI GATC 3393498 4486.99 222 Sau96I GGNCC 2573763 3403.11 293 SbfI CCTGCAGG 24246 32.06 31192 ScaI AGTACT 289077 382.23 2616 ScrFI CCNGG 2952953 3904.49 256 SexAI ACCWGGT 142843 188.87 5294 SfaNI GCATC 2236909 2957.71 338 SfcI CTRYAG 2046655 2706.15 369 SfoI GGCGCC 82481 109.06 9169 SgrAI CRCCGGYG 16145 21.35 46844 SmaI CCCGGG 93377 123.47 8099 SmlI CTYRAG 964766 1275.64 783 SnaBI TACGTA 142981 189.05 5289 SpeI ACTAGT 214698 283.88 3522 SphI GCATGC 313183 414.10 2414 SrfI GCCCGGGC 2525 3.34 299523 SspI AATATT 1243616 1644.35 608 StuI AGGCCT 273062 361.05 2769 StyD4I CCNGG 2952953 3904.49 256 StyI CCWWGG 676928 895.06 1117 SwaI ATTTAAAT 62453 82.58 12109 TaqI TCGA 1675363 2215.22 451 TfiI GAWTC 1912608 2528.91 395 TseI GCWGC 3955424 5229.99 191 Tsp45I GTSAC 2882253 3811.01 262 TspMI CCCGGG 93377 123.47 8099 TspRI CASTG 4478115 5921.11 168 XbaI TCTAGA 221482 292.85 3414 XhoI CTCGAG 109351 144.59 6916 XmaI CCCGGG 93377 123.47 8099 ZraI GACGTC 191364 253.03 3952