# Sebastes nigrocinctus genome, 687.550 Mbp of sequence in 138020 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 175855 255.77 3909 Acc65I GGTACC 172629 251.08 3982 AccI GTMKAC 667925 971.46 1029 AciI CCGC 3289390 4784.22 209 AclI AACGTT 292636 425.62 2349 AcuI CTGAAG 956435 1391.08 718 AfeI AGCGCT 185562 269.89 3705 AflII CTTAAG 219521 319.28 3132 AflIII ACRYGT 1217046 1770.12 564 AgeI ACCGGT 110792 161.14 6205 AluI AGCT 5978998 8696.09 114 AlwI GGATC 1332139 1937.52 516 ApaI GGGCCC 114017 165.83 6030 ApaLI GTGCAC 286352 416.48 2401 ApeKI GCWGC 3558217 5175.21 193 ApoI RAATTY 1704061 2478.45 403 AscI GGCGCGCC 861 1.25 798548 AseI ATTAAT 981605 1427.69 700 AsiSI GCGATCGC 1065 1.55 645586 AvaI CYCGRG 363723 529.01 1890 AvaII GGWCC 1266769 1842.44 542 AvrII CCTAGG 49754 72.36 13818 BaeGI GKGCMC 666858 969.90 1031 BamHI GGATCC 140315 204.08 4900 BanI GGYRCC 546943 795.50 1257 BanII GRGCYC 742508 1079.93 925 BbvI GCAGC 3558217 5175.21 193 BccI CCATC 2441176 3550.54 281 BceAI ACGGC 1098229 1597.31 626 BciVI GTATCC 280347 407.75 2452 BclI TGATCA 433165 630.01 1587 BcoDI GTCTC 2564197 3729.47 268 BfuAI ACCTGC 720754 1048.29 953 BfuCI GATC 3080802 4480.84 223 BglII AGATCT 277237 403.22 2480 BlpI GCTNAGC 274695 399.53 2502 BmrI ACTGGG 511608 744.10 1343 BmtI GCTAGC 164350 239.04 4183 BpmI CTGGAG 958078 1393.47 717 BpuEI CTTGAG 554663 806.72 1239 BsaAI YACGTR 560226 814.82 1227 BsaHI GRCGYC 465194 676.60 1477 BsaI GGTCTC 454107 660.47 1514 BsaWI WCCGGW 457919 666.02 1501 BseRI GAGGAG 1661491 2416.54 413 BsgI GTGCAG 863017 1255.21 796 BsiEI CGRYCG 268323 390.26 2562 BsiHKAI GWGCWC 1112791 1618.49 617 BsiWI CGTACG 47276 68.76 14543 BsmAI GTCTC 2564197 3729.47 268 BsmBI CGTCTC 446456 649.34 1540 BsmFI GGGAC 1474146 2144.06 466 BsmI GAATGC 495620 720.85 1387 BsoBI CYCGRG 363723 529.01 1890 Bsp1286I GDGCHC 1840262 2676.55 373 BspCNI CTCAG 3124106 4543.82 220 BspDI ATCGAT 179155 260.57 3837 BspEI TCCGGA 77185 112.26 8907 BspHI TCATGA 451385 656.51 1523 BspMI ACCTGC 720754 1048.29 953 BspQI GCTCTTC 165062 240.07 4165 BsrBI CCGCTC 305801 444.77 2248 BsrFI RCCGGY 466845 679.00 1472 BsrGI TGTACA 565372 822.30 1216 BsrI ACTGG 2439390 3547.95 281 BssHII GCGCGC 55558 80.81 12375 BssSI CACGAG 291415 423.85 2359 BstBI TTCGAA 76204 110.83 9022 BstEII GGTNACC 165505 240.72 4154 BstNI CCWGG 1933289 2811.85 355 BstUI CGCG 726750 1057.01 946 BstYI RGATCY 803547 1168.71 855 BstZ17I GTATAC 223564 325.16 3075 Bsu36I CCTNAGG 214647 312.19 3203 BtgI CCRYGG 558287 811.99 1231 BtgZI GCGATG 257147 374.00 2673 BtsCI GGATG 2454863 3570.45 280 ClaI ATCGAT 179155 260.57 3837 CviAII CATG 6468370 9407.86 106 CviKI-1 RGCY 16355648 23788.31 42 CviQI GTAC 3313727 4819.62 207 DdeI CTNAG 4364642 6348.11 157 DpnII GATC 3080802 4480.84 223 DraI TTTAAA 1482304 2155.92 463 EaeI YGGCCR 679612 988.45 1011 EagI CGGCCG 88764 129.10 7745 EarI CTCTTC 946687 1376.90 726 EciI GGCGGA 236301 343.69 2909 Eco53kI GAGCTC 281526 409.46 2442 EcoO109I RGGNCCY 621269 903.60 1106 EcoRI GAATTC 197055 286.60 3489 EcoRV GATATC 248501 361.43 2766 FatI CATG 6468370 9407.86 106 FauI CCCGC 722191 1050.38 952 Fnu4HI GCNGC 4362313 6344.72 157 FokI GGATG 2454863 3570.45 280 FseI GGCCGGCC 4108 5.97 167368 FspI TGCGCA 97497 141.80 7052 HaeII RGCGCY 486364 707.39 1413 HaeIII GGCC 2598031 3778.68 264 HgaI GACGC 890659 1295.41 771 HhaI GCGC 1308290 1902.83 525 HincII GTYRAC 1047565 1523.62 656 HindIII AAGCTT 332733 483.94 2066 HinfI GANTC 3560404 5178.39 193 HinP1I GCGC 1308290 1902.83 525 HpaI GTTAAC 372463 541.73 1845 HpaII CCGG 1649907 2399.69 416 HphI GGTGA 2465175 3585.45 278 Hpy188I TCNGA 4990344 7258.16 137 Hpy99I CGWCG 525582 764.43 1308 HpyAV CCTTC 2256815 3282.40 304 HpyCH4III ACNGT 5783157 8411.25 118 HpyCH4IV ACGT 2746880 3995.17 250 HpyCH4V TGCA 7629037 11095.98 90 KasI GGCGCC 74380 108.18 9243 KpnI GGTACC 172629 251.08 3982 MboI GATC 3080802 4480.84 223 MboII GAAGA 3276613 4765.64 209 MfeI CAATTG 221810 322.61 3099 MluCI AATT 7782631 11319.37 88 MluI ACGCGT 57952 84.29 11864 MlyI GAGTC 1829904 2661.49 375 MmeI TCCRAC 864839 1257.86 795 MnlI CCTC 11157120 16227.36 61 MscI TGGCCA 321774 468.00 2136 MseI TTAA 9934737 14449.48 69 MspA1I CMGCKG 1289471 1875.46 533 MspI CCGG 1649907 2399.69 416 NaeI GCCGGC 123885 180.18 5549 NarI GGCGCC 74380 108.18 9243 NciI CCSGG 728805 1060.00 943 NcoI CCATGG 228658 332.57 3006 NdeI CATATG 348492 506.86 1972 NgoMIV GCCGGC 123885 180.18 5549 NheI GCTAGC 164350 239.04 4183 NlaIII CATG 6468370 9407.86 106 NmeAIII GCCGAG 250342 364.11 2746 NotI GCGGCCGC 3345 4.87 205545 NruI TCGCGA 53847 78.32 12768 NsiI ATGCAT 551505 802.13 1246 NspI RCATGY 1956417 2845.49 351 PacI TTAATTAA 59778 86.94 11501 PaeR7I CTCGAG 97505 141.82 7051 PciI ACATGT 697507 1014.48 985 PleI GAGTC 1829904 2661.49 375 PluTI GGCGCC 74380 108.18 9243 PmeI GTTTAAAC 17174 24.98 40034 PmlI CACGTG 175106 254.68 3926 PpuMI RGGWCCY 367667 534.75 1870 PsiI TTATAA 685590 997.15 1002 PspGI CCWGG 1933289 2811.85 355 PspOMI GGGCCC 114017 165.83 6030 PspXI VCTCGAGB 29200 42.47 23546 PstI CTGCAG 830112 1207.35 828 PvuI CGATCG 41155 59.86 16706 PvuII CAGCTG 803488 1168.63 855 RsaI GTAC 3313727 4819.62 207 RsrII CGGWCCG 32578 47.38 21104 SacI GAGCTC 281526 409.46 2442 SacII CCGCGG 68242 99.25 10075 SalI GTCGAC 92666 134.78 7419 SapI GCTCTTC 165062 240.07 4165 Sau3AI GATC 3080802 4480.84 223 Sau96I GGNCC 2331203 3390.59 294 SbfI CCTGCAGG 21814 31.73 31518 ScaI AGTACT 263296 382.95 2611 ScrFI CCNGG 2662094 3871.86 258 SexAI ACCWGGT 129818 188.81 5296 SfaNI GCATC 2017893 2934.90 340 SfcI CTRYAG 1850170 2690.96 371 SfoI GGCGCC 74380 108.18 9243 SgrAI CRCCGGYG 14697 21.38 46781 SmaI CCCGGG 82833 120.48 8300 SmlI CTYRAG 871689 1267.82 788 SnaBI TACGTA 132581 192.83 5185 SpeI ACTAGT 196181 285.33 3504 SphI GCATGC 280984 408.67 2446 SrfI GCCCGGGC 2219 3.23 309846 SspI AATATT 1138867 1656.41 603 StuI AGGCCT 244370 355.42 2813 StyD4I CCNGG 2662094 3871.86 258 StyI CCWWGG 612317 890.58 1122 SwaI ATTTAAAT 56395 82.02 12191 TaqI TCGA 1522108 2213.81 451 TfiI GAWTC 1730500 2516.91 397 TseI GCWGC 3558217 5175.21 193 Tsp45I GTSAC 2612411 3799.59 263 TspMI CCCGGG 82833 120.48 8300 TspRI CASTG 4037672 5872.55 170 XbaI TCTAGA 201557 293.15 3411 XhoI CTCGAG 97505 141.82 7051 XmaI CCCGGG 82833 120.48 8300 ZraI GACGTC 175855 255.77 3909