# Scleropages formosus genome, 777.343 Mbp of sequence in 4818 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 122185 157.18 6362 Acc65I GGTACC 178543 229.68 4353 AccI GTMKAC 624748 803.70 1244 AciI CCGC 5417016 6968.63 143 AclI AACGTT 197915 254.60 3927 AcuI CTGAAG 1236296 1590.41 628 AfeI AGCGCT 274038 352.53 2836 AflII CTTAAG 268763 345.75 2892 AflIII ACRYGT 1224350 1575.05 634 AgeI ACCGGT 121029 155.70 6422 AluI AGCT 6536247 8408.45 118 AlwI GGATC 1605628 2065.53 484 ApaI GGGCCC 173696 223.45 4475 ApaLI GTGCAC 352249 453.15 2206 ApeKI GCWGC 4296024 5526.55 180 ApoI RAATTY 2406504 3095.81 323 AscI GGCGCGCC 2419 3.11 321348 AseI ATTAAT 797088 1025.40 975 AsiSI GCGATCGC 3628 4.67 214262 AvaI CYCGRG 582050 748.77 1335 AvaII GGWCC 1990036 2560.05 390 AvrII CCTAGG 107334 138.08 7242 BaeGI GKGCMC 1060606 1364.40 732 BamHI GGATCC 203585 261.90 3818 BanI GGYRCC 1002008 1289.02 775 BanII GRGCYC 1094720 1408.29 710 BbvI GCAGC 4296024 5526.55 180 BccI CCATC 2984636 3839.54 260 BceAI ACGGC 1201961 1546.24 646 BciVI GTATCC 336913 433.42 2307 BclI TGATCA 435538 560.29 1784 BcoDI GTCTC 2463670 3169.35 315 BfuAI ACCTGC 959085 1233.80 810 BfuCI GATC 3313270 4262.30 234 BglII AGATCT 293699 377.82 2646 BlpI GCTNAGC 330522 425.19 2351 BmrI ACTGGG 796097 1024.13 976 BmtI GCTAGC 94190 121.17 8252 BpmI CTGGAG 1341088 1725.22 579 BpuEI CTTGAG 728452 937.11 1067 BsaAI YACGTR 693568 892.23 1120 BsaHI GRCGYC 575356 740.16 1351 BsaI GGTCTC 502491 646.42 1546 BsaWI WCCGGW 634649 816.43 1224 BseRI GAGGAG 1199020 1542.46 648 BsgI GTGCAG 1213963 1561.68 640 BsiEI CGRYCG 356675 458.84 2179 BsiHKAI GWGCWC 1558335 2004.70 498 BsiWI CGTACG 72851 93.72 10670 BsmAI GTCTC 2463670 3169.35 315 BsmBI CGTCTC 397911 511.89 1953 BsmFI GGGAC 2486161 3198.28 312 BsmI GAATGC 637415 819.99 1219 BsoBI CYCGRG 582050 748.77 1335 Bsp1286I GDGCHC 2805994 3609.73 277 BspCNI CTCAG 3618488 4654.95 214 BspDI ATCGAT 116368 149.70 6680 BspEI TCCGGA 133600 171.87 5818 BspHI TCATGA 416540 535.85 1866 BspMI ACCTGC 959085 1233.80 810 BspQI GCTCTTC 278847 358.72 2787 BsrBI CCGCTC 450000 578.90 1727 BsrFI RCCGGY 479655 617.04 1620 BsrGI TGTACA 676629 870.44 1148 BsrI ACTGG 3530699 4542.01 220 BssHII GCGCGC 176560 227.13 4402 BssSI CACGAG 348482 448.30 2230 BstBI TTCGAA 166112 213.69 4679 BstEII GGTNACC 221345 284.75 3511 BstNI CCWGG 3241651 4170.17 239 BstUI CGCG 1669259 2147.39 465 BstYI RGATCY 958307 1232.80 811 BstZ17I GTATAC 196442 252.71 3957 Bsu36I CCTNAGG 241659 310.88 3216 BtgI CCRYGG 848717 1091.82 915 BtgZI GCGATG 392476 504.89 1980 BtsCI GGATG 2965565 3815.00 262 ClaI ATCGAT 116368 149.70 6680 CviAII CATG 6758324 8694.14 115 CviKI-1 RGCY 18872578 24278.33 41 CviQI GTAC 4210420 5416.43 184 DdeI CTNAG 5155425 6632.11 150 DpnII GATC 3313270 4262.30 234 DraI TTTAAA 1400650 1801.84 554 EaeI YGGCCR 754870 971.09 1029 EagI CGGCCG 115608 148.72 6723 EarI CTCTTC 1056070 1358.56 736 EciI GGCGGA 296185 381.02 2624 Eco53kI GAGCTC 381722 491.06 2036 EcoO109I RGGNCCY 1009972 1299.26 769 EcoRI GAATTC 305415 392.90 2545 EcoRV GATATC 168809 217.16 4604 FatI CATG 6758324 8694.14 115 FauI CCCGC 1345286 1730.62 577 Fnu4HI GCNGC 5542640 7130.24 140 FokI GGATG 2965565 3815.00 262 FseI GGCCGGCC 4035 5.19 192649 FspI TGCGCA 191605 246.49 4057 HaeII RGCGCY 747415 961.50 1040 HaeIII GGCC 3401607 4375.94 228 HgaI GACGC 1118730 1439.17 694 HhaI GCGC 2671919 3437.25 290 HincII GTYRAC 807267 1038.50 962 HindIII AAGCTT 365049 469.61 2129 HinfI GANTC 4027253 5180.80 193 HinP1I GCGC 2671919 3437.25 290 HpaI GTTAAC 235791 303.33 3296 HpaII CCGG 2400567 3088.17 323 HphI GGTGA 3002620 3862.67 258 Hpy188I TCNGA 5121369 6588.30 151 Hpy99I CGWCG 694597 893.55 1119 HpyAV CCTTC 3291728 4234.59 236 HpyCH4III ACNGT 6104419 7852.93 127 HpyCH4IV ACGT 2674323 3440.34 290 HpyCH4V TGCA 8994807 11571.23 86 KasI GGCGCC 129252 166.27 6014 KpnI GGTACC 178543 229.68 4353 MboI GATC 3313270 4262.30 234 MboII GAAGA 3766128 4844.88 206 MfeI CAATTG 219090 281.84 3548 MluCI AATT 8777618 11291.83 88 MluI ACGCGT 83761 107.75 9280 MlyI GAGTC 2050689 2638.08 379 MmeI TCCRAC 937698 1206.29 828 MnlI CCTC 11502806 14797.60 67 MscI TGGCCA 363783 467.98 2136 MseI TTAA 8946620 11509.24 86 MspA1I CMGCKG 1706197 2194.91 455 MspI CCGG 2400567 3088.17 323 NaeI GCCGGC 124333 159.95 6252 NarI GGCGCC 129252 166.27 6014 NciI CCSGG 1209813 1556.34 642 NcoI CCATGG 353113 454.26 2201 NdeI CATATG 374863 482.24 2073 NgoMIV GCCGGC 124333 159.95 6252 NheI GCTAGC 94190 121.17 8252 NlaIII CATG 6758324 8694.14 115 NmeAIII GCCGAG 347090 446.51 2239 NotI GCGGCCGC 5474 7.04 142006 NruI TCGCGA 59383 76.39 13090 NsiI ATGCAT 561042 721.74 1385 NspI RCATGY 1871055 2406.99 415 PacI TTAATTAA 43490 55.95 17874 PaeR7I CTCGAG 135663 174.52 5729 PciI ACATGT 638895 821.90 1216 PleI GAGTC 2050689 2638.08 379 PluTI GGCGCC 129252 166.27 6014 PmeI GTTTAAAC 15942 20.51 48760 PmlI CACGTG 269075 346.15 2888 PpuMI RGGWCCY 600346 772.31 1294 PsiI TTATAA 567454 729.99 1369 PspGI CCWGG 3241651 4170.17 239 PspOMI GGGCCC 173696 223.45 4475 PspXI VCTCGAGB 40532 52.14 19178 PstI CTGCAG 930706 1197.29 835 PvuI CGATCG 71001 91.34 10948 PvuII CAGCTG 1007347 1295.89 771 RsaI GTAC 4210420 5416.43 184 RsrII CGGWCCG 50470 64.93 15402 SacI GAGCTC 381722 491.06 2036 SacII CCGCGG 121857 156.76 6379 SalI GTCGAC 83108 106.91 9353 SapI GCTCTTC 278847 358.72 2787 Sau3AI GATC 3313270 4262.30 234 Sau96I GGNCC 3529432 4540.38 220 SbfI CCTGCAGG 25904 33.32 30008 ScaI AGTACT 339070 436.19 2292 ScrFI CCNGG 4451464 5726.51 174 SexAI ACCWGGT 189719 244.06 4097 SfaNI GCATC 2584289 3324.52 300 SfcI CTRYAG 2028347 2609.33 383 SfoI GGCGCC 129252 166.27 6014 SgrAI CRCCGGYG 21144 27.20 36764 SmaI CCCGGG 138930 178.72 5595 SmlI CTYRAG 1132878 1457.37 686 SnaBI TACGTA 124004 159.52 6268 SpeI ACTAGT 184029 236.74 4224 SphI GCATGC 285885 367.77 2719 SrfI GCCCGGGC 3089 3.97 251648 SspI AATATT 911725 1172.87 852 StuI AGGCCT 290815 374.11 2672 StyD4I CCNGG 4451464 5726.51 174 StyI CCWWGG 1142830 1470.18 680 SwaI ATTTAAAT 56304 72.43 13806 TaqI TCGA 1916988 2466.08 405 TfiI GAWTC 1976564 2542.72 393 TseI GCWGC 4296024 5526.55 180 Tsp45I GTSAC 3117154 4010.01 249 TspMI CCCGGG 138930 178.72 5595 TspRI CASTG 5226880 6724.04 148 XbaI TCTAGA 212368 273.20 3660 XhoI CTCGAG 135663 174.52 5729 XmaI CCCGGG 138930 178.72 5595 ZraI GACGTC 122185 157.18 6362