# Rhincodon typus genome, 2567.632 Mbp of sequence in 997976 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 175329 68.28 14644 Acc65I GGTACC 430525 167.67 5963 AccI GTMKAC 2088700 813.47 1229 AciI CCGC 5169886 2013.48 496 AclI AACGTT 686962 267.55 3737 AcuI CTGAAG 4858195 1892.09 528 AfeI AGCGCT 218152 84.96 11769 AflII CTTAAG 911482 354.99 2816 AflIII ACRYGT 2475071 963.95 1037 AgeI ACCGGT 141141 54.97 18191 AluI AGCT 20871763 8128.80 123 AlwI GGATC 6049945 2356.24 424 ApaI GGGCCC 426939 166.28 6014 ApaLI GTGCAC 880959 343.10 2914 ApeKI GCWGC 10811808 4210.81 237 ApoI RAATTY 11059467 4307.26 232 AscI GGCGCGCC 610 0.24 4209232 AseI ATTAAT 2766563 1077.48 928 AsiSI GCGATCGC 1240 0.48 2070670 AvaI CYCGRG 953695 371.43 2692 AvaII GGWCC 5255616 2046.87 488 AvrII CCTAGG 529821 206.35 4846 BaeGI GKGCMC 2509109 977.21 1023 BamHI GGATCC 633401 246.69 4053 BanI GGYRCC 1838696 716.11 1396 BanII GRGCYC 2141147 833.90 1199 BbvI GCAGC 10811808 4210.81 237 BccI CCATC 12050310 4693.16 213 BceAI ACGGC 1270380 494.77 2021 BciVI GTATCC 1488778 579.83 1724 BclI TGATCA 1962133 764.18 1308 BcoDI GTCTC 7784684 3031.85 329 BfuAI ACCTGC 3240091 1261.90 792 BfuCI GATC 13688711 5331.26 187 BglII AGATCT 1433329 558.23 1791 BlpI GCTNAGC 959183 373.57 2676 BmrI ACTGGG 2621549 1021.00 979 BmtI GCTAGC 455794 177.52 5633 BpmI CTGGAG 4547049 1770.91 564 BpuEI CTTGAG 2462145 958.92 1042 BsaAI YACGTR 1173909 457.20 2187 BsaHI GRCGYC 498225 194.04 5153 BsaI GGTCTC 1674347 652.10 1533 BsaWI WCCGGW 822454 320.32 3121 BseRI GAGGAG 4085569 1591.18 628 BsgI GTGCAG 3888016 1514.24 660 BsiEI CGRYCG 184300 71.78 13931 BsiHKAI GWGCWC 3263413 1270.98 786 BsiWI CGTACG 41926 16.33 61241 BsmAI GTCTC 7784684 3031.85 329 BsmBI CGTCTC 478869 186.50 5361 BsmFI GGGAC 6230447 2426.53 412 BsmI GAATGC 2689974 1047.65 954 BsoBI CYCGRG 953695 371.43 2692 Bsp1286I GDGCHC 5894701 2295.77 435 BspCNI CTCAG 13491088 5254.29 190 BspDI ATCGAT 323604 126.03 7934 BspEI TCCGGA 191148 74.45 13432 BspHI TCATGA 1766252 687.89 1453 BspMI ACCTGC 3240091 1261.90 792 BspQI GCTCTTC 599764 233.59 4281 BsrBI CCGCTC 453017 176.43 5667 BsrFI RCCGGY 491055 191.25 5228 BsrGI TGTACA 2113189 823.01 1215 BsrI ACTGG 11779176 4587.56 217 BssHII GCGCGC 58537 22.80 43863 BssSI CACGAG 525773 204.77 4883 BstBI TTCGAA 362732 141.27 7078 BstEII GGTNACC 979816 381.60 2620 BstNI CCWGG 10887574 4240.32 235 BstUI CGCG 708573 275.96 3623 BstYI RGATCY 4144422 1614.10 619 BstZ17I GTATAC 556520 216.74 4613 Bsu36I CCTNAGG 1161951 452.54 2209 BtgI CCRYGG 1783267 694.52 1439 BtgZI GCGATG 553094 215.41 4642 BtsCI GGATG 12382153 4822.40 207 ClaI ATCGAT 323604 126.03 7934 CviAII CATG 23265081 9060.91 110 CviKI-1 RGCY 59963882 23353.77 42 CviQI GTAC 11659800 4541.07 220 DdeI CTNAG 19604461 7635.23 130 DpnII GATC 13688711 5331.26 187 DraI TTTAAA 5392493 2100.18 476 EaeI YGGCCR 2000502 779.12 1283 EagI CGGCCG 43703 17.02 58751 EarI CTCTTC 3605889 1404.36 712 EciI GGCGGA 398296 155.12 6446 Eco53kI GAGCTC 711070 276.94 3610 EcoO109I RGGNCCY 3037350 1182.94 845 EcoRI GAATTC 1879247 731.90 1366 EcoRV GATATC 999718 389.35 2568 FatI CATG 23265081 9060.91 110 FauI CCCGC 1356207 528.19 1893 Fnu4HI GCNGC 11728700 4567.91 218 FokI GGATG 12382153 4822.40 207 FseI GGCCGGCC 2320 0.90 1106737 FspI TGCGCA 257862 100.43 9957 HaeII RGCGCY 620132 241.52 4140 HaeIII GGCC 11214278 4367.56 228 HgaI GACGC 1068528 416.15 2402 HhaI GCGC 2018887 786.28 1271 HincII GTYRAC 3349026 1304.32 766 HindIII AAGCTT 1606263 625.58 1598 HinfI GANTC 16437295 6401.73 156 HinP1I GCGC 2018887 786.28 1271 HpaI GTTAAC 1165530 453.93 2202 HpaII CCGG 2572389 1001.85 998 HphI GGTGA 11350056 4420.44 226 Hpy188I TCNGA 19435959 7569.61 132 Hpy99I CGWCG 402352 156.70 6381 HpyAV CCTTC 13845338 5392.26 185 HpyCH4III ACNGT 17624226 6864.00 145 HpyCH4IV ACGT 5301737 2064.84 484 HpyCH4V TGCA 30556551 11900.68 84 KasI GGCGCC 82563 32.16 31099 KpnI GGTACC 430525 167.67 5963 MboI GATC 13688711 5331.26 187 MboII GAAGA 14703582 5726.52 174 MfeI CAATTG 1743341 678.97 1472 MluCI AATT 39178693 15258.69 65 MluI ACGCGT 41126 16.02 62433 MlyI GAGTC 7029082 2737.57 365 MmeI TCCRAC 3848729 1498.94 667 MnlI CCTC 42658113 16613.80 60 MscI TGGCCA 1568523 610.88 1636 MseI TTAA 33527123 13057.61 76 MspA1I CMGCKG 2617157 1019.29 981 MspI CCGG 2572389 1001.85 998 NaeI GCCGGC 86907 33.85 29544 NarI GGCGCC 82563 32.16 31099 NciI CCSGG 1320170 514.16 1944 NcoI CCATGG 1318668 513.57 1947 NdeI CATATG 1115029 434.26 2302 NgoMIV GCCGGC 86907 33.85 29544 NheI GCTAGC 455794 177.52 5633 NlaIII CATG 23265081 9060.91 110 NmeAIII GCCGAG 428159 166.75 5996 NotI GCGGCCGC 1658 0.65 1548631 NruI TCGCGA 52515 20.45 48893 NsiI ATGCAT 1810232 705.02 1418 NspI RCATGY 5192302 2022.21 494 PacI TTAATTAA 123038 47.92 20868 PaeR7I CTCGAG 271981 105.93 9440 PciI ACATGT 1749470 681.36 1467 PleI GAGTC 7029082 2737.57 365 PluTI GGCGCC 82563 32.16 31099 PmeI GTTTAAAC 54845 21.36 46816 PmlI CACGTG 384053 149.57 6685 PpuMI RGGWCCY 1814737 706.77 1414 PsiI TTATAA 2160306 841.36 1188 PspGI CCWGG 10887574 4240.32 235 PspOMI GGGCCC 426939 166.28 6014 PspXI VCTCGAGB 75345 29.34 34078 PstI CTGCAG 2787406 1085.59 921 PvuI CGATCG 50346 19.61 50999 PvuII CAGCTG 2015748 785.06 1273 RsaI GTAC 11659800 4541.07 220 RsrII CGGWCCG 19024 7.41 134968 SacI GAGCTC 711070 276.94 3610 SacII CCGCGG 37986 14.79 67594 SalI GTCGAC 145310 56.59 17670 SapI GCTCTTC 599764 233.59 4281 Sau3AI GATC 13688711 5331.26 187 Sau96I GGNCC 9862902 3841.24 260 SbfI CCTGCAGG 41070 16.00 62518 ScaI AGTACT 1165447 453.90 2203 ScrFI CCNGG 12207744 4754.48 210 SexAI ACCWGGT 754188 293.73 3404 SfaNI GCATC 9369702 3649.16 274 SfcI CTRYAG 6336911 2468.00 405 SfoI GGCGCC 82563 32.16 31099 SgrAI CRCCGGYG 9412 3.67 272804 SmaI CCCGGG 190231 74.09 13497 SmlI CTYRAG 3645608 1419.83 704 SnaBI TACGTA 223675 87.11 11479 SpeI ACTAGT 849543 330.87 3022 SphI GCATGC 854760 332.90 3003 SrfI GCCCGGGC 2861 1.11 897459 SspI AATATT 3640472 1417.83 705 StuI AGGCCT 1044643 406.85 2457 StyD4I CCNGG 12207744 4754.48 210 StyI CCWWGG 4269220 1662.71 601 SwaI ATTTAAAT 207762 80.92 12358 TaqI TCGA 4372405 1702.89 587 TfiI GAWTC 9408213 3664.16 272 TseI GCWGC 10811808 4210.81 237 Tsp45I GTSAC 8687676 3383.54 295 TspMI CCCGGG 190231 74.09 13497 TspRI CASTG 16905729 6584.17 151 XbaI TCTAGA 1019963 397.24 2517 XhoI CTCGAG 271981 105.93 9440 XmaI CCCGGG 190231 74.09 13497 ZraI GACGTC 175329 68.28 14644