# Rhamphochromis esox genome, 71.295 Mbp of sequence in 55751 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 13791 193.44 5169 Acc65I GGTACC 17386 243.86 4100 AccI GTMKAC 67057 940.56 1063 AciI CCGC 333001 4670.74 214 AclI AACGTT 21000 294.55 3395 AcuI CTGAAG 112723 1581.08 632 AfeI AGCGCT 17495 245.39 4075 AflII CTTAAG 27896 391.28 2555 AflIII ACRYGT 109855 1540.85 648 AgeI ACCGGT 16489 231.28 4323 AluI AGCT 684653 9603.09 104 AlwI GGATC 192915 2705.87 369 ApaI GGGCCC 20631 289.37 3455 ApaLI GTGCAC 32549 456.54 2190 ApeKI GCWGC 372378 5223.05 191 ApoI RAATTY 212191 2976.24 335 AscI GGCGCGCC 166 2.33 429488 AseI ATTAAT 62884 882.02 1133 AsiSI GCGATCGC 178 2.50 400534 AvaI CYCGRG 56240 788.83 1267 AvaII GGWCC 173372 2431.75 411 AvrII CCTAGG 8498 119.19 8389 BaeGI GKGCMC 91103 1277.83 782 BamHI GGATCC 35297 495.08 2019 BanI GGYRCC 64796 908.84 1100 BanII GRGCYC 90356 1267.35 789 BbvI GCAGC 372378 5223.05 191 BccI CCATC 245408 3442.15 290 BceAI ACGGC 108176 1517.30 659 BciVI GTATCC 34148 478.97 2087 BclI TGATCA 44620 625.85 1597 BcoDI GTCTC 239693 3361.99 297 BfuAI ACCTGC 89156 1250.52 799 BfuCI GATC 364010 5105.68 195 BglII AGATCT 31201 437.63 2285 BlpI GCTNAGC 29557 414.57 2412 BmrI ACTGGG 63719 893.74 1118 BmtI GCTAGC 19176 268.97 3717 BpmI CTGGAG 94173 1320.89 757 BpuEI CTTGAG 58132 815.37 1226 BsaAI YACGTR 57634 808.39 1237 BsaHI GRCGYC 41853 587.04 1703 BsaI GGTCTC 45569 639.16 1564 BsaWI WCCGGW 61372 860.82 1161 BseRI GAGGAG 103144 1446.72 691 BsgI GTGCAG 101719 1426.73 700 BsiEI CGRYCG 27496 385.66 2592 BsiHKAI GWGCWC 122043 1711.80 584 BsiWI CGTACG 4784 67.10 14902 BsmAI GTCTC 239693 3361.99 297 BsmBI CGTCTC 35732 501.18 1995 BsmFI GGGAC 167546 2350.04 425 BsmI GAATGC 52700 739.18 1352 BsoBI CYCGRG 56240 788.83 1267 Bsp1286I GDGCHC 218915 3070.55 325 BspCNI CTCAG 353145 4953.29 201 BspDI ATCGAT 13351 187.26 5340 BspEI TCCGGA 13530 189.77 5269 BspHI TCATGA 39776 557.91 1792 BspMI ACCTGC 89156 1250.52 799 BspQI GCTCTTC 19061 267.35 3740 BsrBI CCGCTC 25525 358.02 2793 BsrFI RCCGGY 56939 798.64 1252 BsrGI TGTACA 49257 690.89 1447 BsrI ACTGG 291193 4084.34 244 BssHII GCGCGC 6310 88.51 11298 BssSI CACGAG 31228 438.01 2283 BstBI TTCGAA 12550 176.03 5680 BstEII GGTNACC 23540 330.18 3028 BstNI CCWGG 263215 3691.91 270 BstUI CGCG 98431 1380.61 724 BstYI RGATCY 112792 1582.04 632 BstZ17I GTATAC 17696 248.21 4028 Bsu36I CCTNAGG 24658 345.86 2891 BtgI CCRYGG 61921 868.52 1151 BtgZI GCGATG 23770 333.40 2999 BtsCI GGATG 241256 3383.91 295 ClaI ATCGAT 13351 187.26 5340 CviAII CATG 601966 8443.30 118 CviKI-1 RGCY 1855608 26027.16 38 CviQI GTAC 319130 4476.19 223 DdeI CTNAG 512846 7193.29 139 DpnII GATC 364010 5105.68 195 DraI TTTAAA 147318 2066.31 483 EaeI YGGCCR 69767 978.57 1021 EagI CGGCCG 8395 117.75 8492 EarI CTCTTC 93790 1315.52 760 EciI GGCGGA 22508 315.70 3167 Eco53kI GAGCTC 31407 440.52 2270 EcoO109I RGGNCCY 88190 1236.97 808 EcoRI GAATTC 29334 411.44 2430 EcoRV GATATC 22691 318.27 3141 FatI CATG 601966 8443.30 118 FauI CCCGC 81007 1136.22 880 Fnu4HI GCNGC 447747 6280.20 159 FokI GGATG 241256 3383.91 295 FseI GGCCGGCC 498 6.99 143162 FspI TGCGCA 14554 204.14 4898 HaeII RGCGCY 48862 685.35 1459 HaeIII GGCC 330427 4634.64 215 HgaI GACGC 84410 1183.95 844 HhaI GCGC 160360 2249.24 444 HincII GTYRAC 97191 1363.22 733 HindIII AAGCTT 48216 676.29 1478 HinfI GANTC 404040 5667.15 176 HinP1I GCGC 160360 2249.24 444 HpaI GTTAAC 32356 453.83 2203 HpaII CCGG 227532 3191.41 313 HphI GGTGA 258765 3629.49 275 Hpy188I TCNGA 505961 7096.72 140 Hpy99I CGWCG 50563 709.21 1410 HpyAV CCTTC 258720 3628.86 275 HpyCH4III ACNGT 552964 7755.99 128 HpyCH4IV ACGT 246369 3455.62 289 HpyCH4V TGCA 785803 11021.84 90 KasI GGCGCC 8695 121.96 8199 KpnI GGTACC 17386 243.86 4100 MboI GATC 364010 5105.68 195 MboII GAAGA 360488 5056.28 197 MfeI CAATTG 25396 356.21 2807 MluCI AATT 780337 10945.17 91 MluI ACGCGT 6861 96.23 10391 MlyI GAGTC 200949 2818.55 354 MmeI TCCRAC 83963 1177.68 849 MnlI CCTC 1012685 14204.14 70 MscI TGGCCA 35099 492.31 2031 MseI TTAA 943196 13229.47 75 MspA1I CMGCKG 138518 1942.88 514 MspI CCGG 227532 3191.41 313 NaeI GCCGGC 12331 172.96 5781 NarI GGCGCC 8695 121.96 8199 NciI CCSGG 118663 1664.39 600 NcoI CCATGG 25107 352.16 2839 NdeI CATATG 33408 468.59 2134 NgoMIV GCCGGC 12331 172.96 5781 NheI GCTAGC 19176 268.97 3717 NlaIII CATG 601966 8443.30 118 NmeAIII GCCGAG 24250 340.14 2940 NotI GCGGCCGC 404 5.67 176472 NruI TCGCGA 5042 70.72 14140 NsiI ATGCAT 47102 660.66 1513 NspI RCATGY 180359 2529.75 395 PacI TTAATTAA 3569 50.06 19976 PaeR7I CTCGAG 12111 169.87 5886 PciI ACATGT 59799 838.75 1192 PleI GAGTC 200949 2818.55 354 PluTI GGCGCC 8695 121.96 8199 PmeI GTTTAAAC 2211 31.01 32245 PmlI CACGTG 20354 285.49 3502 PpuMI RGGWCCY 44329 621.77 1608 PsiI TTATAA 54256 761.01 1314 PspGI CCWGG 263215 3691.91 270 PspOMI GGGCCC 20631 289.37 3455 PspXI VCTCGAGB 3616 50.72 19716 PstI CTGCAG 95245 1335.93 748 PvuI CGATCG 5251 73.65 13577 PvuII CAGCTG 93962 1317.93 758 RsaI GTAC 319130 4476.19 223 RsrII CGGWCCG 4886 68.53 14591 SacI GAGCTC 31407 440.52 2270 SacII CCGCGG 8073 113.23 8831 SalI GTCGAC 14682 205.93 4855 SapI GCTCTTC 19061 267.35 3740 Sau3AI GATC 364010 5105.68 195 Sau96I GGNCC 332177 4659.19 214 SbfI CCTGCAGG 2551 35.78 27947 ScaI AGTACT 26435 370.78 2696 ScrFI CCNGG 381878 5356.30 186 SexAI ACCWGGT 17484 245.23 4077 SfaNI GCATC 215065 3016.55 331 SfcI CTRYAG 186789 2619.94 381 SfoI GGCGCC 8695 121.96 8199 SgrAI CRCCGGYG 1310 18.37 54423 SmaI CCCGGG 17231 241.69 4137 SmlI CTYRAG 98139 1376.52 726 SnaBI TACGTA 9898 138.83 7202 SpeI ACTAGT 18343 257.28 3886 SphI GCATGC 36725 515.11 1941 SrfI GCCCGGGC 378 5.30 188611 SspI AATATT 80737 1132.43 883 StuI AGGCCT 28807 404.05 2474 StyD4I CCNGG 381878 5356.30 186 StyI CCWWGG 91562 1284.27 778 SwaI ATTTAAAT 4425 62.07 16111 TaqI TCGA 183405 2572.48 388 TfiI GAWTC 203091 2848.60 351 TseI GCWGC 372378 5223.05 191 Tsp45I GTSAC 270171 3789.48 263 TspMI CCCGGG 17231 241.69 4137 TspRI CASTG 445747 6252.14 159 XbaI TCTAGA 33414 468.67 2133 XhoI CTCGAG 12111 169.87 5886 XmaI CCCGGG 17231 241.69 4137 ZraI GACGTC 13791 193.44 5169