# Pundamilia nyererei genome, 830.133 Mbp of sequence in 7236 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 116305 140.10 7137 Acc65I GGTACC 101923 122.78 8144 AccI GTMKAC 577865 696.11 1436 AciI CCGC 2475142 2981.62 335 AclI AACGTT 184434 222.17 4500 AcuI CTGAAG 1233009 1485.31 673 AfeI AGCGCT 199554 240.39 4159 AflII CTTAAG 256880 309.44 3231 AflIII ACRYGT 1136835 1369.46 730 AgeI ACCGGT 97826 117.84 8485 AluI AGCT 7170785 8638.11 115 AlwI GGATC 1409650 1698.10 588 ApaI GGGCCC 103851 125.10 7993 ApaLI GTGCAC 355825 428.64 2332 ApeKI GCWGC 3848779 4636.34 215 ApoI RAATTY 2212455 2665.18 375 AscI GGCGCGCC 817 0.98 1016074 AseI ATTAAT 748981 902.24 1108 AsiSI GCGATCGC 1157 1.39 717487 AvaI CYCGRG 380295 458.11 2182 AvaII GGWCC 1221315 1471.23 679 AvrII CCTAGG 67035 80.75 12383 BaeGI GKGCMC 756421 911.20 1097 BamHI GGATCC 145403 175.16 5709 BanI GGYRCC 487466 587.21 1702 BanII GRGCYC 768570 925.84 1080 BbvI GCAGC 3848779 4636.34 215 BccI CCATC 2664268 3209.45 311 BceAI ACGGC 767278 924.28 1081 BciVI GTATCC 299887 361.25 2768 BclI TGATCA 475431 572.72 1746 BcoDI GTCTC 2353765 2835.41 352 BfuAI ACCTGC 841625 1013.84 986 BfuCI GATC 3301183 3976.69 251 BglII AGATCT 327256 394.22 2536 BlpI GCTNAGC 312606 376.57 2655 BmrI ACTGGG 607753 732.11 1365 BmtI GCTAGC 179974 216.80 4612 BpmI CTGGAG 990468 1193.14 838 BpuEI CTTGAG 596170 718.16 1392 BsaAI YACGTR 503720 606.79 1648 BsaHI GRCGYC 335118 403.69 2477 BsaI GGTCTC 403626 486.22 2056 BsaWI WCCGGW 301290 362.94 2755 BseRI GAGGAG 1156941 1393.68 717 BsgI GTGCAG 1107951 1334.67 749 BsiEI CGRYCG 157856 190.16 5258 BsiHKAI GWGCWC 1294493 1559.38 641 BsiWI CGTACG 29522 35.56 28119 BsmAI GTCTC 2353765 2835.41 352 BsmBI CGTCTC 310884 374.50 2670 BsmFI GGGAC 1328163 1599.94 625 BsmI GAATGC 551421 664.26 1505 BsoBI CYCGRG 380295 458.11 2182 Bsp1286I GDGCHC 2041761 2459.56 406 BspCNI CTCAG 3734281 4498.41 222 BspDI ATCGAT 117594 141.66 7059 BspEI TCCGGA 51870 62.48 16004 BspHI TCATGA 443109 533.78 1873 BspMI ACCTGC 841625 1013.84 986 BspQI GCTCTTC 201401 242.61 4121 BsrBI CCGCTC 218149 262.79 3805 BsrFI RCCGGY 332769 400.86 2494 BsrGI TGTACA 552031 664.99 1503 BsrI ACTGG 2940626 3542.35 282 BssHII GCGCGC 47601 57.34 17439 BssSI CACGAG 282725 340.58 2936 BstBI TTCGAA 74106 89.27 11201 BstEII GGTNACC 177239 213.51 4683 BstNI CCWGG 2291633 2760.56 362 BstUI CGCG 566420 682.32 1465 BstYI RGATCY 903557 1088.45 918 BstZ17I GTATAC 163985 197.54 5062 Bsu36I CCTNAGG 236104 284.42 3515 BtgI CCRYGG 469964 566.13 1766 BtgZI GCGATG 223031 268.67 3722 BtsCI GGATG 2627486 3165.14 315 ClaI ATCGAT 117594 141.66 7059 CviAII CATG 6599753 7950.23 125 CviKI-1 RGCY 18042282 21734.20 46 CviQI GTAC 2986180 3597.23 277 DdeI CTNAG 5303994 6389.33 156 DpnII GATC 3301183 3976.69 251 DraI TTTAAA 1823807 2197.01 455 EaeI YGGCCR 553745 667.06 1499 EagI CGGCCG 43514 52.42 19077 EarI CTCTTC 999656 1204.21 830 EciI GGCGGA 158543 190.99 5236 Eco53kI GAGCTC 318047 383.13 2610 EcoO109I RGGNCCY 607760 732.12 1365 EcoRI GAATTC 264491 318.61 3138 EcoRV GATATC 219984 265.00 3773 FatI CATG 6599753 7950.23 125 FauI CCCGC 578454 696.82 1435 Fnu4HI GCNGC 4437515 5345.55 187 FokI GGATG 2627486 3165.14 315 FseI GGCCGGCC 2307 2.78 359832 FspI TGCGCA 119787 144.30 6930 HaeII RGCGCY 469725 565.84 1767 HaeIII GGCC 2597169 3128.62 319 HgaI GACGC 696147 838.60 1192 HhaI GCGC 1319339 1589.31 629 HincII GTYRAC 838046 1009.53 990 HindIII AAGCTT 504911 608.23 1644 HinfI GANTC 3788379 4563.58 219 HinP1I GCGC 1319339 1589.31 629 HpaI GTTAAC 291814 351.53 2844 HpaII CCGG 1158495 1395.55 716 HphI GGTGA 2654635 3197.84 312 Hpy188I TCNGA 5073383 6111.53 163 Hpy99I CGWCG 313066 377.13 2651 HpyAV CCTTC 2595009 3126.02 319 HpyCH4III ACNGT 5730470 6903.07 144 HpyCH4IV ACGT 2167556 2611.09 382 HpyCH4V TGCA 8900391 10721.64 93 KasI GGCGCC 65342 78.71 12704 KpnI GGTACC 101923 122.78 8144 MboI GATC 3301183 3976.69 251 MboII GAAGA 3809093 4588.53 217 MfeI CAATTG 209058 251.84 3970 MluCI AATT 8319384 10021.75 99 MluI ACGCGT 47232 56.90 17575 MlyI GAGTC 1879218 2263.75 441 MmeI TCCRAC 763581 919.83 1087 MnlI CCTC 10392399 12518.95 79 MscI TGGCCA 335013 403.57 2477 MseI TTAA 10469324 12611.62 79 MspA1I CMGCKG 1336174 1609.59 621 MspI CCGG 1158495 1395.55 716 NaeI GCCGGC 70465 84.88 11780 NarI GGCGCC 65342 78.71 12704 NciI CCSGG 563235 678.49 1473 NcoI CCATGG 225589 271.75 3679 NdeI CATATG 371501 447.52 2234 NgoMIV GCCGGC 70465 84.88 11780 NheI GCTAGC 179974 216.80 4612 NlaIII CATG 6599753 7950.23 125 NmeAIII GCCGAG 200949 242.07 4131 NotI GCGGCCGC 2314 2.79 358743 NruI TCGCGA 25690 30.95 32313 NsiI ATGCAT 591830 712.93 1402 NspI RCATGY 2010370 2421.74 412 PacI TTAATTAA 47483 57.20 17482 PaeR7I CTCGAG 116060 139.81 7152 PciI ACATGT 679808 818.91 1221 PleI GAGTC 1879218 2263.75 441 PluTI GGCGCC 65342 78.71 12704 PmeI GTTTAAAC 23407 28.20 35465 PmlI CACGTG 192092 231.40 4321 PpuMI RGGWCCY 343940 414.32 2413 PsiI TTATAA 623568 751.17 1331 PspGI CCWGG 2291633 2760.56 362 PspOMI GGGCCC 103851 125.10 7993 PspXI VCTCGAGB 35711 43.02 23245 PstI CTGCAG 974930 1174.43 851 PvuI CGATCG 37830 45.57 21943 PvuII CAGCTG 964420 1161.77 860 RsaI GTAC 2986180 3597.23 277 RsrII CGGWCCG 26392 31.79 31453 SacI GAGCTC 318047 383.13 2610 SacII CCGCGG 36490 43.96 22749 SalI GTCGAC 74759 90.06 11104 SapI GCTCTTC 201401 242.61 4121 Sau3AI GATC 3301183 3976.69 251 Sau96I GGNCC 2282413 2749.45 363 SbfI CCTGCAGG 29176 35.15 28452 ScaI AGTACT 273252 329.17 3037 ScrFI CCNGG 2854868 3439.05 290 SexAI ACCWGGT 151606 182.63 5475 SfaNI GCATC 2292036 2761.05 362 SfcI CTRYAG 1992251 2399.92 416 SfoI GGCGCC 65342 78.71 12704 SgrAI CRCCGGYG 8976 10.81 92483 SmaI CCCGGG 72942 87.87 11380 SmlI CTYRAG 969110 1167.41 856 SnaBI TACGTA 78653 94.75 10554 SpeI ACTAGT 192885 232.35 4303 SphI GCATGC 340130 409.73 2440 SrfI GCCCGGGC 2528 3.05 328375 SspI AATATT 956578 1152.32 867 StuI AGGCCT 278276 335.22 2983 StyD4I CCNGG 2854868 3439.05 290 StyI CCWWGG 742966 895.00 1117 SwaI ATTTAAAT 64257 77.41 12918 TaqI TCGA 1399826 1686.27 593 TfiI GAWTC 1909161 2299.82 434 TseI GCWGC 3848779 4636.34 215 Tsp45I GTSAC 2727335 3285.42 304 TspMI CCCGGG 72942 87.87 11380 TspRI CASTG 4981394 6000.72 166 XbaI TCTAGA 196876 237.16 4216 XhoI CTCGAG 116060 139.81 7152 XmaI CCCGGG 72942 87.87 11380 ZraI GACGTC 116305 140.10 7137