# Pseudopleuronectes yokohamae genome, 547.831 Mbp of sequence in 525502 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 142138 259.46 3854 Acc65I GGTACC 59513 108.63 9205 AccI GTMKAC 431915 788.41 1268 AciI CCGC 2581119 4711.52 212 AclI AACGTT 179372 327.42 3054 AcuI CTGAAG 922300 1683.55 593 AfeI AGCGCT 130070 237.43 4211 AflII CTTAAG 168860 308.23 3244 AflIII ACRYGT 1072788 1958.25 510 AgeI ACCGGT 74592 136.16 7344 AluI AGCT 4977772 9086.33 110 AlwI GGATC 1375340 2510.52 398 ApaI GGGCCC 103587 189.09 5288 ApaLI GTGCAC 276650 504.99 1980 ApeKI GCWGC 3155832 5760.59 173 ApoI RAATTY 1396643 2549.40 392 AscI GGCGCGCC 696 1.27 787113 AseI ATTAAT 615021 1122.65 890 AsiSI GCGATCGC 1018 1.86 538144 AvaI CYCGRG 384635 702.11 1424 AvaII GGWCC 1017111 1856.61 538 AvrII CCTAGG 38033 69.42 14404 BaeGI GKGCMC 604131 1102.77 906 BamHI GGATCC 163572 298.58 3349 BanI GGYRCC 365512 667.20 1498 BanII GRGCYC 680330 1241.86 805 BbvI GCAGC 3155832 5760.59 173 BccI CCATC 2076967 3791.25 263 BceAI ACGGC 745262 1360.39 735 BciVI GTATCC 223184 407.40 2454 BclI TGATCA 392653 716.74 1395 BcoDI GTCTC 2134832 3896.88 256 BfuAI ACCTGC 643878 1175.32 850 BfuCI GATC 2953814 5391.83 185 BglII AGATCT 268890 490.83 2037 BlpI GCTNAGC 233916 426.99 2341 BmrI ACTGGG 485715 886.61 1127 BmtI GCTAGC 87782 160.24 6240 BpmI CTGGAG 894583 1632.95 612 BpuEI CTTGAG 469080 856.25 1167 BsaAI YACGTR 447200 816.31 1225 BsaHI GRCGYC 390375 712.58 1403 BsaI GGTCTC 333438 608.65 1642 BsaWI WCCGGW 318464 581.32 1720 BseRI GAGGAG 1361842 2485.88 402 BsgI GTGCAG 860790 1571.27 636 BsiEI CGRYCG 193934 354.00 2824 BsiHKAI GWGCWC 1010792 1845.08 541 BsiWI CGTACG 32092 58.58 17070 BsmAI GTCTC 2134832 3896.88 256 BsmBI CGTCTC 397541 725.66 1378 BsmFI GGGAC 1255679 2292.09 436 BsmI GAATGC 358882 655.10 1526 BsoBI CYCGRG 384635 702.11 1424 Bsp1286I GDGCHC 1639598 2992.89 334 BspCNI CTCAG 3013025 5499.92 181 BspDI ATCGAT 123259 224.99 4444 BspEI TCCGGA 80276 146.53 6824 BspHI TCATGA 387583 707.49 1413 BspMI ACCTGC 643878 1175.32 850 BspQI GCTCTTC 153328 279.88 3572 BsrBI CCGCTC 276360 504.46 1982 BsrFI RCCGGY 347374 634.09 1577 BsrGI TGTACA 399964 730.09 1369 BsrI ACTGG 2180134 3979.57 251 BssHII GCGCGC 35228 64.30 15551 BssSI CACGAG 260822 476.10 2100 BstBI TTCGAA 72155 131.71 7592 BstEII GGTNACC 128844 235.19 4251 BstNI CCWGG 1905819 3478.84 287 BstUI CGCG 544982 994.80 1005 BstYI RGATCY 852089 1555.39 642 BstZ17I GTATAC 106430 194.28 5147 Bsu36I CCTNAGG 208888 381.30 2622 BtgI CCRYGG 449874 821.19 1217 BtgZI GCGATG 221097 403.59 2477 BtsCI GGATG 2062098 3764.11 265 ClaI ATCGAT 123259 224.99 4444 CviAII CATG 5121264 9348.25 106 CviKI-1 RGCY 13557607 24747.79 40 CviQI GTAC 2079290 3795.50 263 DdeI CTNAG 3979868 7264.77 137 DpnII GATC 2953814 5391.83 185 DraI TTTAAA 1147057 2093.82 477 EaeI YGGCCR 510916 932.62 1072 EagI CGGCCG 68018 124.16 8054 EarI CTCTTC 851418 1554.16 643 EciI GGCGGA 189049 345.09 2897 Eco53kI GAGCTC 275418 502.74 1989 EcoO109I RGGNCCY 518370 946.22 1056 EcoRI GAATTC 209245 381.95 2618 EcoRV GATATC 187231 341.77 2925 FatI CATG 5121264 9348.25 106 FauI CCCGC 563658 1028.89 971 Fnu4HI GCNGC 3859395 7044.86 141 FokI GGATG 2062098 3764.11 265 FseI GGCCGGCC 3263 5.96 167891 FspI TGCGCA 77723 141.87 7048 HaeII RGCGCY 378294 690.53 1448 HaeIII GGCC 2281575 4164.74 240 HgaI GACGC 752478 1373.56 728 HhaI GCGC 1043382 1904.57 525 HincII GTYRAC 763081 1392.91 717 HindIII AAGCTT 312301 570.07 1754 HinfI GANTC 3460365 6316.48 158 HinP1I GCGC 1043382 1904.57 525 HpaI GTTAAC 218895 399.57 2502 HpaII CCGG 1366340 2494.09 400 HphI GGTGA 2201725 4018.99 248 Hpy188I TCNGA 4242793 7744.71 129 Hpy99I CGWCG 372788 680.48 1469 HpyAV CCTTC 2051829 3745.37 266 HpyCH4III ACNGT 4089585 7465.05 133 HpyCH4IV ACGT 2133923 3895.22 256 HpyCH4V TGCA 6201423 11319.96 88 KasI GGCGCC 62309 113.74 8792 KpnI GGTACC 59513 108.63 9205 MboI GATC 2953814 5391.83 185 MboII GAAGA 3021933 5516.18 181 MfeI CAATTG 203033 370.61 2698 MluCI AATT 6105679 11145.19 89 MluI ACGCGT 41423 75.61 13225 MlyI GAGTC 1700278 3103.65 322 MmeI TCCRAC 705797 1288.35 776 MnlI CCTC 9682558 17674.35 56 MscI TGGCCA 224645 410.06 2438 MseI TTAA 7461014 13619.19 73 MspA1I CMGCKG 1041364 1900.89 526 MspI CCGG 1366340 2494.09 400 NaeI GCCGGC 97683 178.31 5608 NarI GGCGCC 62309 113.74 8792 NciI CCSGG 696294 1271.00 786 NcoI CCATGG 189600 346.09 2889 NdeI CATATG 255643 466.65 2142 NgoMIV GCCGGC 97683 178.31 5608 NheI GCTAGC 87782 160.24 6240 NlaIII CATG 5121264 9348.25 106 NmeAIII GCCGAG 262117 478.46 2090 NotI GCGGCCGC 2786 5.09 196637 NruI TCGCGA 23341 42.61 23470 NsiI ATGCAT 389910 711.73 1405 NspI RCATGY 1466459 2676.85 373 PacI TTAATTAA 35120 64.11 15598 PaeR7I CTCGAG 96846 176.78 5656 PciI ACATGT 594129 1084.51 922 PleI GAGTC 1700278 3103.65 322 PluTI GGCGCC 62309 113.74 8792 PmeI GTTTAAAC 16536 30.18 33129 PmlI CACGTG 181307 330.95 3021 PpuMI RGGWCCY 267689 488.63 2046 PsiI TTATAA 505279 922.33 1084 PspGI CCWGG 1905819 3478.84 287 PspOMI GGGCCC 103587 189.09 5288 PspXI VCTCGAGB 29790 54.38 18389 PstI CTGCAG 802793 1465.40 682 PvuI CGATCG 36195 66.07 15135 PvuII CAGCTG 639759 1167.80 856 RsaI GTAC 2079290 3795.50 263 RsrII CGGWCCG 17619 32.16 31093 SacI GAGCTC 275418 502.74 1989 SacII CCGCGG 53791 98.19 10184 SalI GTCGAC 89839 163.99 6097 SapI GCTCTTC 153328 279.88 3572 Sau3AI GATC 2953814 5391.83 185 Sau96I GGNCC 2008784 3666.79 272 SbfI CCTGCAGG 24073 43.94 22757 ScaI AGTACT 154200 281.47 3552 ScrFI CCNGG 2602113 4749.85 210 SexAI ACCWGGT 131158 239.41 4176 SfaNI GCATC 1727221 3152.84 317 SfcI CTRYAG 1489973 2719.77 367 SfoI GGCGCC 62309 113.74 8792 SgrAI CRCCGGYG 11203 20.45 48900 SmaI CCCGGG 89698 163.73 6107 SmlI CTYRAG 734786 1341.26 745 SnaBI TACGTA 63719 116.31 8597 SpeI ACTAGT 120845 220.59 4533 SphI GCATGC 177634 324.25 3084 SrfI GCCCGGGC 3135 5.72 174746 SspI AATATT 721552 1317.11 759 StuI AGGCCT 207268 378.34 2643 StyD4I CCNGG 2602113 4749.85 210 StyI CCWWGG 566133 1033.41 967 SwaI ATTTAAAT 51848 94.64 10566 TaqI TCGA 1452658 2651.65 377 TfiI GAWTC 1760087 3212.83 311 TseI GCWGC 3155832 5760.59 173 Tsp45I GTSAC 2156115 3935.73 254 TspMI CCCGGG 89698 163.73 6107 TspRI CASTG 3620817 6609.37 151 XbaI TCTAGA 145823 266.18 3756 XhoI CTCGAG 96846 176.78 5656 XmaI CCCGGG 89698 163.73 6107 ZraI GACGTC 142138 259.46 3854